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Chlorine in PDB 4fcg: Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl)

Protein crystallography data

The structure of Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl), PDB code: 4fcg was solved by A.U.Singer, X.Xu, H.Cui, M.D.Zimmerman, W.Minor, A.Joachimiak, A.Savchenko, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.93 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 50.463, 95.228, 115.465, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl) (pdb code 4fcg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl), PDB code: 4fcg:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4fcg

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Chlorine binding site 1 out of 4 in the Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:65.8
occ:1.00
NH2 A:ARG407 4.5 40.7 1.0
NH1 A:ARG407 4.7 41.2 1.0
NZ A:LYS383 4.9 61.2 1.0

Chlorine binding site 2 out of 4 in 4fcg

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Chlorine binding site 2 out of 4 in the Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:65.5
occ:1.00
NE2 A:HIS230 3.5 19.6 1.0
CD2 A:HIS230 3.8 18.1 1.0
O A:HOH732 4.2 17.4 0.5
CE1 A:HIS230 4.5 17.1 1.0
CG A:HIS230 4.9 14.4 1.0

Chlorine binding site 3 out of 4 in 4fcg

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Chlorine binding site 3 out of 4 in the Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:39.0
occ:1.00
OG A:SER323 2.9 26.3 1.0
OE1 A:GLU290 3.2 41.7 1.0
N A:SER323 3.3 21.6 1.0
CB A:SER323 3.3 25.1 1.0
CB A:GLU290 3.5 29.3 1.0
CB A:PRO321 3.6 27.1 1.0
N A:ALA322 3.7 21.9 1.0
CD A:GLU290 3.8 41.4 1.0
CA A:SER323 3.9 27.6 1.0
C A:PRO321 4.1 25.4 1.0
CA A:PRO321 4.2 24.8 1.0
CG A:GLU290 4.2 33.1 1.0
C A:ALA322 4.3 22.0 1.0
CA A:PRO291 4.3 36.1 1.0
CA A:ALA322 4.3 27.9 1.0
CB A:ALA322 4.4 28.0 1.0
CA A:GLU290 4.6 33.6 1.0
CB A:PRO291 4.6 38.4 1.0
OE2 A:GLU290 4.7 40.9 1.0
N A:PRO291 4.9 35.5 1.0
CG A:PRO321 4.9 28.0 1.0
O A:PRO321 5.0 21.9 1.0

Chlorine binding site 4 out of 4 in 4fcg

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Chlorine binding site 4 out of 4 in the Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:47.8
occ:1.00
O A:HOH614 3.0 24.4 1.0
NH2 A:ARG273 3.7 45.7 1.0
NE A:ARG273 3.7 41.1 1.0
CZ A:ARG273 4.2 43.8 1.0
O A:HOH680 4.4 45.9 1.0
CG A:ARG273 4.9 27.3 1.0
CD A:ARG273 4.9 34.9 1.0

Reference:

A.U.Singer, S.Schulze, X.Xu, T.Skarina, H.Cui, M.Egler, T.Srikumar, B.Raught, A.Savchenko, U.Bonas. Structure of the Leucine-Rich Repeat Domain of the Type III Effector XCV3220 (Xopl) To Be Published.
Page generated: Sat Dec 12 10:36:53 2020

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