Chlorine in PDB 4fdw: Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution, PDB code: 4fdw
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.80 /
2.05
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.140,
112.320,
55.990,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.1 /
22
|
Other elements in 4fdw:
The structure of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
(pdb code 4fdw). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution, PDB code: 4fdw:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4fdw
Go back to
Chlorine Binding Sites List in 4fdw
Chlorine binding site 1 out
of 5 in the Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl516
b:48.0
occ:1.00
|
NE2
|
A:HIS124
|
2.8
|
40.4
|
1.0
|
N
|
A:ILE146
|
3.0
|
35.0
|
1.0
|
CE1
|
A:HIS124
|
3.5
|
41.7
|
1.0
|
O
|
A:HOH683
|
3.5
|
40.7
|
1.0
|
CA
|
A:ILE145
|
3.6
|
35.6
|
1.0
|
CD
|
A:PRO127
|
3.6
|
32.9
|
1.0
|
OG
|
A:SER126
|
3.7
|
40.2
|
1.0
|
C
|
A:ILE145
|
3.8
|
38.3
|
1.0
|
O
|
A:GLU144
|
3.8
|
40.8
|
1.0
|
CA
|
A:ILE146
|
4.0
|
34.4
|
1.0
|
CB
|
A:ILE146
|
4.0
|
38.3
|
1.0
|
O
|
A:ILE146
|
4.0
|
30.7
|
1.0
|
CD2
|
A:HIS124
|
4.0
|
39.7
|
1.0
|
CA
|
A:SER126
|
4.1
|
30.5
|
1.0
|
CB
|
A:SER126
|
4.1
|
34.0
|
1.0
|
CG1
|
A:ILE146
|
4.2
|
39.9
|
1.0
|
CD
|
A:CD513
|
4.4
|
91.7
|
0.5
|
CB
|
A:ILE145
|
4.4
|
39.4
|
1.0
|
N
|
A:ILE145
|
4.4
|
35.0
|
1.0
|
C
|
A:ILE146
|
4.5
|
34.2
|
1.0
|
C
|
A:GLU144
|
4.5
|
40.0
|
1.0
|
CG2
|
A:ILE145
|
4.5
|
40.8
|
1.0
|
CG1
|
A:ILE145
|
4.6
|
40.2
|
1.0
|
CG
|
A:PRO127
|
4.7
|
37.5
|
1.0
|
N
|
A:PRO127
|
4.7
|
32.1
|
1.0
|
ND1
|
A:HIS124
|
4.7
|
42.4
|
1.0
|
CD1
|
A:ILE146
|
4.8
|
52.1
|
1.0
|
C
|
A:SER126
|
4.9
|
32.4
|
1.0
|
O
|
A:ILE145
|
5.0
|
36.5
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4fdw
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Chlorine Binding Sites List in 4fdw
Chlorine binding site 2 out
of 5 in the Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl517
b:68.3
occ:0.70
|
O
|
A:HOH853
|
3.0
|
75.7
|
1.0
|
N
|
A:GLU144
|
3.3
|
37.5
|
1.0
|
N
|
A:ASN143
|
3.4
|
41.7
|
1.0
|
O
|
A:GLU144
|
3.6
|
40.8
|
1.0
|
CD
|
A:CD513
|
3.7
|
91.7
|
0.5
|
CB
|
A:ASN143
|
4.0
|
45.4
|
1.0
|
CA
|
A:ASN143
|
4.0
|
41.2
|
1.0
|
C
|
A:TYR142
|
4.1
|
44.7
|
1.0
|
CA
|
A:TYR142
|
4.1
|
40.6
|
1.0
|
C
|
A:ASN143
|
4.1
|
43.0
|
1.0
|
CA
|
A:GLU144
|
4.1
|
36.4
|
1.0
|
CD2
|
A:TYR142
|
4.2
|
40.9
|
1.0
|
CB
|
A:GLU144
|
4.2
|
37.7
|
1.0
|
CB
|
A:TYR142
|
4.2
|
39.8
|
1.0
|
C
|
A:GLU144
|
4.3
|
40.0
|
1.0
|
CG
|
A:TYR142
|
4.7
|
40.6
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4fdw
Go back to
Chlorine Binding Sites List in 4fdw
Chlorine binding site 3 out
of 5 in the Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl518
b:33.7
occ:1.00
|
CD
|
A:CD504
|
2.5
|
31.6
|
0.8
|
O
|
A:HOH606
|
3.0
|
24.7
|
1.0
|
N
|
A:ASN371
|
3.2
|
31.6
|
1.0
|
OD1
|
A:ASN370
|
3.3
|
36.9
|
1.0
|
CB
|
A:ASN371
|
3.4
|
30.8
|
1.0
|
CA
|
A:GLY344
|
3.6
|
25.4
|
1.0
|
O
|
A:SER367
|
3.6
|
31.7
|
1.0
|
CA
|
A:ASN371
|
3.8
|
31.8
|
1.0
|
N
|
A:ASN370
|
3.9
|
28.3
|
1.0
|
CA
|
A:GLY347
|
3.9
|
30.8
|
1.0
|
O
|
A:HOH605
|
3.9
|
24.3
|
1.0
|
O
|
A:HOH603
|
3.9
|
20.6
|
1.0
|
O
|
A:HOH706
|
4.0
|
43.0
|
1.0
|
O
|
A:ALA368
|
4.1
|
28.2
|
1.0
|
C
|
A:ASN371
|
4.2
|
35.3
|
1.0
|
C
|
A:PHE369
|
4.2
|
30.1
|
1.0
|
O
|
A:ASN371
|
4.2
|
36.7
|
1.0
|
C
|
A:ALA368
|
4.3
|
29.9
|
1.0
|
N
|
A:GLY347
|
4.3
|
30.6
|
1.0
|
C
|
A:ASN370
|
4.3
|
34.2
|
1.0
|
CA
|
A:PHE369
|
4.3
|
25.4
|
1.0
|
N
|
A:PHE369
|
4.4
|
26.0
|
1.0
|
CG
|
A:ASN370
|
4.4
|
42.1
|
1.0
|
N
|
A:GLY344
|
4.4
|
26.4
|
1.0
|
C
|
A:GLY344
|
4.4
|
31.0
|
1.0
|
C
|
A:SER367
|
4.6
|
33.3
|
1.0
|
CA
|
A:ASN370
|
4.6
|
30.0
|
1.0
|
CG2
|
A:THR372
|
4.7
|
26.4
|
1.0
|
CG
|
A:ASN371
|
4.7
|
45.3
|
1.0
|
OG
|
A:SER367
|
4.8
|
29.2
|
0.4
|
O
|
A:GLY344
|
4.9
|
30.6
|
1.0
|
ND2
|
A:ASN371
|
4.9
|
33.5
|
1.0
|
O
|
A:PHE369
|
5.0
|
29.0
|
1.0
|
N
|
A:THR372
|
5.0
|
31.2
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4fdw
Go back to
Chlorine Binding Sites List in 4fdw
Chlorine binding site 4 out
of 5 in the Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl519
b:75.7
occ:1.00
|
O
|
A:HOH833
|
2.8
|
64.6
|
1.0
|
O
|
A:HOH750
|
2.9
|
48.3
|
1.0
|
NZ
|
A:LYS221
|
3.4
|
79.5
|
1.0
|
N
|
A:SER246
|
3.4
|
27.2
|
1.0
|
O
|
A:HOH720
|
3.4
|
47.6
|
1.0
|
CA
|
A:GLY245
|
3.6
|
22.3
|
1.0
|
CB
|
A:ALA224
|
3.7
|
31.2
|
1.0
|
C
|
A:GLY245
|
4.0
|
28.0
|
1.0
|
CB
|
A:SER246
|
4.1
|
30.6
|
1.0
|
N
|
A:ALA224
|
4.3
|
30.9
|
1.0
|
CA
|
A:ALA224
|
4.3
|
30.1
|
1.0
|
CE
|
A:LYS221
|
4.4
|
71.3
|
1.0
|
CA
|
A:SER246
|
4.4
|
27.3
|
1.0
|
O
|
A:HOH742
|
4.4
|
47.6
|
1.0
|
N
|
A:GLY245
|
4.9
|
22.7
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4fdw
Go back to
Chlorine Binding Sites List in 4fdw
Chlorine binding site 5 out
of 5 in the Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Putative Cell Surface Protein (BACOVA_01565) From Bacteroides Ovatus Atcc 8483 at 2.05 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl520
b:46.3
occ:0.50
|
N
|
A:ASP312
|
2.9
|
36.2
|
1.0
|
CB
|
A:ASP312
|
3.6
|
40.8
|
1.0
|
CA
|
A:ASN311
|
3.7
|
36.0
|
1.0
|
CA
|
A:ASP312
|
3.8
|
37.1
|
1.0
|
C
|
A:ASN311
|
3.8
|
37.8
|
1.0
|
O
|
A:ASP312
|
4.1
|
42.9
|
1.0
|
O
|
A:PHE310
|
4.2
|
43.5
|
1.0
|
C
|
A:ASP312
|
4.4
|
41.2
|
1.0
|
CB
|
A:ASN311
|
4.5
|
33.5
|
1.0
|
OD1
|
A:ASN311
|
4.7
|
57.0
|
1.0
|
N
|
A:ASN311
|
4.7
|
36.7
|
1.0
|
C
|
A:PHE310
|
4.8
|
41.5
|
1.0
|
CG
|
A:ASP312
|
4.8
|
59.9
|
1.0
|
O
|
A:ASN311
|
5.0
|
35.3
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 13:41:24 2024
|