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Chlorine in PDB 4fur: Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308

Enzymatic activity of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308

All present enzymatic activity of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308:
3.5.1.5;

Protein crystallography data

The structure of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308, PDB code: 4fur was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 83.510, 145.010, 137.180, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 18.8

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 (pdb code 4fur). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308, PDB code: 4fur:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 13 in 4fur

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Chlorine binding site 1 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:31.0
occ:1.00
 CE1 A:HIS14 3.0 26.9 0.5
NE2 A:HIS14 3.1 26.6 0.5
NH2 C:ARG23 3.2 29.4 1.0
O A:HOH303 3.4 24.2 1.0
CL A:CL202 3.7 36.5 1.0
CD2 A:HIS14 3.8 26.2 0.5
ND1 A:HIS14 4.0 26.2 0.5
NE2 A:HIS14 4.0 26.8 0.5
CB A:LEU44 4.1 29.8 1.0
CD A:LYS10 4.1 34.9 1.0
CE1 A:HIS14 4.2 26.5 0.5
CB A:LYS10 4.3 30.8 1.0
CZ C:ARG23 4.3 27.1 1.0
CD1 A:LEU44 4.4 30.4 1.0
CD2 A:LEU44 4.4 29.8 1.0
O A:HOH308 4.4 22.2 1.0
CG A:LEU44 4.5 30.0 1.0
CG A:LYS10 4.6 33.3 1.0
NH1 C:ARG23 4.6 27.9 1.0
O A:LEU44 4.9 29.8 1.0

Chlorine binding site 2 out of 13 in 4fur

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Chlorine binding site 2 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:36.5
occ:1.00
 ND1 A:HIS14 3.5 26.2 0.5
CD2 A:HIS14 3.5 26.2 0.5
CL A:CL201 3.7 31.0 1.0
CE1 A:HIS14 3.8 26.9 0.5
NE2 A:HIS14 4.1 26.6 0.5
CA A:LEU11 4.1 25.8 1.0
N A:LEU11 4.2 25.3 1.0
CG1 C:VAL19 4.2 23.9 1.0
CB A:LEU11 4.2 26.2 1.0
NH2 C:ARG23 4.2 29.4 1.0
CD2 C:LEU16 4.3 23.7 1.0
C A:LYS10 4.4 29.5 1.0
CD1 A:LEU11 4.5 26.5 1.0
NH1 C:ARG23 4.5 27.9 1.0
CB A:LYS10 4.6 30.8 1.0
CG A:HIS14 4.6 25.6 0.5
O A:LYS10 4.6 29.9 1.0
CG A:HIS14 4.6 25.8 0.5
CZ C:ARG23 4.8 27.1 1.0
O A:GLU7 4.8 31.1 1.0
O C:HOH329 4.9 33.5 1.0
CB C:VAL19 4.9 23.4 1.0
CG2 C:VAL19 4.9 25.7 1.0

Chlorine binding site 3 out of 13 in 4fur

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Chlorine binding site 3 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:25.6
occ:1.00
 CE1 B:HIS14 3.0 26.8 0.5
NH2 A:ARG23 3.0 27.6 0.5
NE2 B:HIS14 3.0 27.3 0.5
O B:HOH304 3.2 27.5 1.0
NH2 A:ARG23 3.5 27.3 0.5
CL B:CL201 3.8 35.2 1.0
NE2 B:HIS14 3.9 26.4 0.5
CD2 B:HIS14 3.9 26.4 0.5
ND1 B:HIS14 4.0 25.6 0.5
CE1 B:HIS14 4.1 26.8 0.5
CB B:LEU44 4.1 22.3 1.0
CZ A:ARG23 4.1 26.5 0.5
CD B:LYS10 4.3 30.8 1.0
CB B:LYS10 4.3 25.6 1.0
NH1 A:ARG23 4.4 24.9 0.5
CZ A:ARG23 4.4 27.6 0.5
CD1 B:LEU44 4.5 21.8 1.0
CG B:LEU44 4.6 22.7 1.0
CD2 B:LEU44 4.6 23.4 1.0
O B:HOH303 4.6 23.9 1.0
O B:HOH329 4.7 29.6 1.0
O B:LEU44 4.8 24.1 1.0
CG B:LYS10 4.8 28.0 1.0
NH1 A:ARG23 4.8 28.6 0.5
C B:LEU44 4.9 23.2 1.0
CA B:LEU44 4.9 22.1 1.0

Chlorine binding site 4 out of 13 in 4fur

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Chlorine binding site 4 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:35.2
occ:1.00
 CD2 B:HIS14 3.3 26.4 0.5
ND1 B:HIS14 3.4 25.6 0.5
CE1 B:HIS14 3.7 26.8 0.5
CL A:CL203 3.8 25.6 1.0
NE2 B:HIS14 3.9 27.3 0.5
CA B:LEU11 4.0 24.8 1.0
N B:LEU11 4.1 24.0 1.0
NH2 A:ARG23 4.1 27.3 0.5
CG1 A:VAL19 4.2 26.3 1.0
CD1 B:LEU11 4.3 30.2 1.0
C B:LYS10 4.3 23.3 1.0
CB B:LEU11 4.4 27.5 1.0
CD2 A:LEU16 4.4 30.4 1.0
CG B:HIS14 4.4 25.1 0.5
O B:LYS10 4.4 22.1 1.0
CG B:HIS14 4.5 24.6 0.5
NH1 A:ARG23 4.6 24.9 0.5
NH2 A:ARG23 4.6 27.6 0.5
CB B:LYS10 4.6 25.6 1.0
CB A:VAL19 4.9 25.9 1.0
CG2 A:VAL19 4.9 27.6 1.0
NE2 B:HIS14 4.9 26.4 0.5
CG B:LEU11 5.0 30.4 1.0

Chlorine binding site 5 out of 13 in 4fur

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Chlorine binding site 5 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:25.9
occ:1.00
 CE1 C:HIS14 3.2 21.1 0.5
NE2 C:HIS14 3.2 20.8 0.5
O C:HOH305 3.3 22.6 1.0
NH2 B:ARG23 3.3 32.1 1.0
CL C:CL202 3.7 33.8 1.0
CD2 C:HIS14 3.9 21.3 0.5
ND1 C:HIS14 4.0 21.2 0.5
CB C:LYS10 4.1 40.7 1.0
NE2 C:HIS14 4.2 20.8 0.5
CB C:LEU44 4.2 25.2 1.0
CZ B:ARG23 4.3 28.7 1.0
CE1 C:HIS14 4.3 20.6 0.5
NH1 B:ARG23 4.3 28.1 1.0
CD1 C:LEU44 4.4 25.0 1.0
CD C:LYS10 4.4 41.6 1.0
O C:HOH306 4.5 21.2 1.0
CG C:LYS10 4.6 40.8 1.0
CG C:LEU44 4.7 25.1 1.0
CD2 C:LEU44 4.7 24.5 1.0
O C:HOH307 4.9 31.6 1.0
O C:LEU44 4.9 25.1 1.0

Chlorine binding site 6 out of 13 in 4fur

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Chlorine binding site 6 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:33.8
occ:1.00
 O C:HOH307 2.8 31.6 1.0
ND1 C:HIS14 3.4 21.2 0.5
CD2 C:HIS14 3.4 21.3 0.5
CL C:CL201 3.7 25.9 1.0
CE1 C:HIS14 3.8 21.1 0.5
CA C:LEU11 3.9 22.4 1.0
N C:LEU11 4.0 20.8 1.0
NE2 C:HIS14 4.0 20.8 0.5
C C:LYS10 4.2 40.8 1.0
CD2 B:LEU16 4.3 22.0 1.0
CB C:LEU11 4.3 24.4 1.0
CG1 B:VAL19 4.3 21.3 1.0
O C:LYS10 4.4 40.0 1.0
CD1 C:LEU11 4.4 25.5 1.0
CG C:HIS14 4.5 20.9 0.5
CB C:LYS10 4.5 40.7 1.0
CG C:HIS14 4.6 21.0 0.5
NH2 B:ARG23 4.6 32.1 1.0
NH1 B:ARG23 4.8 28.1 1.0
CG2 B:VAL19 4.9 22.7 1.0
O C:GLU7 4.9 42.6 1.0
CB B:VAL19 4.9 20.9 1.0

Chlorine binding site 7 out of 13 in 4fur

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Chlorine binding site 7 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl201

b:27.7
occ:1.00
 O D:HOH371 2.7 37.3 1.0
CD2 D:HIS14 3.5 26.7 1.0
CL D:CL202 3.7 54.1 1.0
NH2 E:ARG23 4.0 28.0 0.5
NE2 D:HIS14 4.0 28.1 1.0
CD1 D:LEU11 4.0 30.7 1.0
CA D:LEU11 4.1 28.4 1.0
CD2 E:LEU16 4.2 23.5 1.0
N D:LEU11 4.2 27.4 1.0
CB D:LYS10 4.4 28.2 1.0
CB D:LEU11 4.4 29.9 1.0
C D:LYS10 4.5 26.8 1.0
CG1 E:VAL19 4.5 24.0 1.0
NH1 E:ARG23 4.6 25.1 0.5
O D:LYS10 4.7 26.1 1.0
CG D:HIS14 4.7 25.5 1.0
CZ E:ARG23 4.7 26.4 0.5
CG D:LEU11 4.8 31.1 1.0
O E:HOH331 4.9 32.1 1.0
O D:GLU7 5.0 34.3 1.0

Chlorine binding site 8 out of 13 in 4fur

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Chlorine binding site 8 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl202

b:54.1
occ:1.00
 NE2 D:HIS14 2.9 28.1 1.0
NH2 E:ARG23 3.0 28.0 0.5
O D:HOH338 3.0 24.7 1.0
CL D:CL201 3.7 27.7 1.0
NH2 E:ARG23 3.8 26.0 0.5
CD2 D:HIS14 3.8 26.7 1.0
CE1 D:HIS14 3.8 27.4 1.0
O D:HOH321 4.0 23.3 1.0
CB D:LEU44 4.1 22.7 1.0
CZ E:ARG23 4.2 26.4 0.5
O D:HOH358 4.2 22.7 1.0
CD D:LYS10 4.5 32.4 1.0
CB D:LYS10 4.5 28.2 1.0
CD1 D:LEU44 4.5 22.5 1.0
CD2 D:LEU44 4.5 23.3 1.0
CG D:LEU44 4.7 22.6 1.0
O D:LEU44 4.7 22.4 1.0
CZ E:ARG23 4.8 25.3 0.5
NH1 E:ARG23 4.8 25.1 0.5
O D:HOH317 4.8 25.5 1.0
NE E:ARG23 4.9 24.6 0.5
C D:LEU44 4.9 22.4 1.0
O E:HOH330 4.9 25.9 1.0
CA D:LEU44 4.9 22.2 1.0
CG D:LYS10 4.9 30.1 1.0
ND1 D:HIS14 5.0 26.1 1.0
CG D:HIS14 5.0 25.5 1.0

Chlorine binding site 9 out of 13 in 4fur

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Chlorine binding site 9 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl201

b:27.2
occ:1.00
 O F:HOH307 3.4 33.3 1.0
CD2 E:HIS14 3.4 23.5 1.0
NH2 F:ARG23 3.7 27.4 0.5
CL F:CL202 3.9 50.3 1.0
NE2 E:HIS14 3.9 24.2 1.0
CA E:LEU11 4.0 25.3 1.0
N E:LEU11 4.1 25.6 1.0
CG1 F:VAL19 4.2 26.1 1.0
CD2 F:LEU16 4.2 23.6 1.0
CB E:LEU11 4.3 25.6 1.0
CD1 E:LEU11 4.3 25.3 1.0
CB E:LYS10 4.4 28.0 1.0
NH1 F:ARG23 4.4 32.6 0.5
C E:LYS10 4.4 26.0 1.0
CG E:HIS14 4.6 22.8 1.0
NH1 F:ARG23 4.7 24.6 0.5
CZ F:ARG23 4.7 25.5 0.5
O E:LYS10 4.7 25.0 1.0
CG E:LEU11 4.9 26.6 1.0
O E:GLU7 4.9 28.4 1.0

Chlorine binding site 10 out of 13 in 4fur

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Chlorine binding site 10 out of 13 in the Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl202

b:62.0
occ:1.00
 N E:HIS96 3.0 35.4 1.0
O E:HIS96 3.3 35.9 1.0
CA E:LEU95 3.5 30.5 1.0
C E:LEU95 3.7 32.2 1.0
CB E:LEU95 3.7 29.8 1.0
C E:HIS96 4.0 37.0 1.0
CA E:HIS96 4.1 38.2 1.0
CD2 E:LEU95 4.2 30.7 1.0
CA E:PRO98 4.5 29.1 1.0
N E:PRO98 4.6 29.9 1.0
CG E:LEU95 4.6 29.7 1.0
CB E:PRO98 4.6 28.2 1.0
O E:SER94 4.6 29.7 1.0
O E:MET57 4.6 35.4 1.0
CB E:HIS96 4.7 42.9 1.0
N E:LEU95 4.8 29.1 1.0
O E:LEU95 4.8 33.2 1.0
CD2 E:HIS96 4.9 44.2 1.0
CD E:PRO98 4.9 29.6 1.0

Reference:

J.W.Fairman, D.R.Davies, B.L.Staker, L.Stewart. Crystal Structure of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308 To Be Published.
Page generated: Sun Jul 21 14:05:28 2024

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