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Chlorine in PDB 4fzl: High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000

Protein crystallography data

The structure of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzl was solved by A.W.Roszak, R.Grinter, J.R.Cogdell, D.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.92 / 1.46
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.810, 96.090, 64.270, 90.00, 114.17, 90.00
R / Rfree (%) 15.2 / 20.1

Other elements in 4fzl:

The structure of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 (pdb code 4fzl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4fzl

Go back to Chlorine Binding Sites List in 4fzl
Chlorine binding site 1 out of 2 in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:23.4
occ:1.00
O A:HOH678 3.1 23.7 1.0
N A:ILE113 3.3 21.0 1.0
ND2 A:ASN114 3.4 25.4 1.0
N A:ASN114 3.7 23.0 1.0
CB A:GLN112 3.7 23.7 1.0
CA A:GLN112 3.8 21.6 1.0
CG A:GLN112 3.9 20.6 1.0
CB A:ASN114 4.0 23.7 1.0
C A:GLN112 4.1 21.8 1.0
CG1 A:ILE113 4.1 22.6 1.0
NE2 A:GLN112 4.2 34.3 1.0
CG A:ASN114 4.2 24.3 1.0
CA A:ILE113 4.2 21.9 1.0
C A:ILE113 4.3 22.6 1.0
CD A:GLN112 4.3 27.5 1.0
CA A:ASN114 4.4 20.8 1.0
CB A:ILE113 4.8 23.8 1.0
OE1 A:GLN112 4.9 37.1 1.0
O A:HOH461 5.0 26.5 1.0

Chlorine binding site 2 out of 2 in 4fzl

Go back to Chlorine Binding Sites List in 4fzl
Chlorine binding site 2 out of 2 in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl309

b:25.9
occ:1.00
N B:ILE113 3.3 24.1 1.0
ND2 B:ASN114 3.4 31.6 1.0
CB B:GLN112 3.7 26.0 1.0
N B:ASN114 3.7 23.2 1.0
CA B:GLN112 3.8 23.4 1.0
CG B:GLN112 3.9 31.0 1.0
CB B:ASN114 4.0 29.3 1.0
C B:GLN112 4.1 27.4 1.0
CG1 B:ILE113 4.1 24.8 1.0
CG B:ASN114 4.2 31.9 1.0
CA B:ILE113 4.3 27.2 1.0
CD B:GLN112 4.3 44.0 1.0
C B:ILE113 4.3 23.2 1.0
NE2 B:GLN112 4.4 46.9 1.0
CA B:ASN114 4.4 26.6 1.0
CB B:ILE113 4.8 22.1 1.0
O B:HOH480 4.9 30.2 1.0

Reference:

R.Grinter, A.W.Roszak, R.J.Cogdell, J.J.Milner, D.Walker. The Crystal Structure of the Lipid II-Degrading Bacteriocin Syringacin M Suggests Unexpected Evolutionary Relationships Between Colicin M-Like Bacteriocins. J.Biol.Chem. V. 287 38876 2012.
ISSN: ISSN 0021-9258
PubMed: 22995910
DOI: 10.1074/JBC.M112.400150
Page generated: Sat Dec 12 10:38:20 2020

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