Chlorine in PDB 4fzl: High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000

The structure of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzl was solved by A.W.Roszak, R.Grinter, J.R.Cogdell, D.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.92 / 1.46
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.810, 96.090, 64.270, 90.00, 114.17, 90.00
R / Rfree (%)	15.2 / 20.1

The structure of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Calcium	(Ca)	2 atoms

The binding sites of Chlorine atom in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 (pdb code 4fzl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl308 b:23.4 occ:1.00 O A:HOH678 3.1 23.7 1.0 N A:ILE113 3.3 21.0 1.0 ND2 A:ASN114 3.4 25.4 1.0 N A:ASN114 3.7 23.0 1.0 CB A:GLN112 3.7 23.7 1.0 CA A:GLN112 3.8 21.6 1.0 CG A:GLN112 3.9 20.6 1.0 CB A:ASN114 4.0 23.7 1.0 C A:GLN112 4.1 21.8 1.0 CG1 A:ILE113 4.1 22.6 1.0 NE2 A:GLN112 4.2 34.3 1.0 CG A:ASN114 4.2 24.3 1.0 CA A:ILE113 4.2 21.9 1.0 C A:ILE113 4.3 22.6 1.0 CD A:GLN112 4.3 27.5 1.0 CA A:ASN114 4.4 20.8 1.0 CB A:ILE113 4.8 23.8 1.0 OE1 A:GLN112 4.9 37.1 1.0 O A:HOH461 5.0 26.5 1.0

Chlorine binding site 2 out of 2 in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl309 b:25.9 occ:1.00 N B:ILE113 3.3 24.1 1.0 ND2 B:ASN114 3.4 31.6 1.0 CB B:GLN112 3.7 26.0 1.0 N B:ASN114 3.7 23.2 1.0 CA B:GLN112 3.8 23.4 1.0 CG B:GLN112 3.9 31.0 1.0 CB B:ASN114 4.0 29.3 1.0 C B:GLN112 4.1 27.4 1.0 CG1 B:ILE113 4.1 24.8 1.0 CG B:ASN114 4.2 31.9 1.0 CA B:ILE113 4.3 27.2 1.0 CD B:GLN112 4.3 44.0 1.0 C B:ILE113 4.3 23.2 1.0 NE2 B:GLN112 4.4 46.9 1.0 CA B:ASN114 4.4 26.6 1.0 CB B:ILE113 4.8 22.1 1.0 O B:HOH480 4.9 30.2 1.0

R.Grinter, A.W.Roszak, R.J.Cogdell, J.J.Milner, D.Walker. The Crystal Structure of the Lipid II-Degrading Bacteriocin Syringacin M Suggests Unexpected Evolutionary Relationships Between Colicin M-Like Bacteriocins. J.Biol.Chem. V. 287 38876 2012.
ISSN: ISSN 0021-9258
PubMed: 22995910
DOI: 10.1074/JBC.M112.400150