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Chlorine in PDB 4g2n: Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66

Protein crystallography data

The structure of Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66, PDB code: 4g2n was solved by V.N.Malashkevich, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garforth, A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.Lim, A.Celikgil, G.Villegas, B.Evans, W.Zenchek, J.Love, A.Fiser, K.Khafizov, R.Seidel, J.B.Bonanno, S.C.Almo, New York Structural Genomics Researchconsortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.96 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 63.431, 68.158, 77.369, 96.93, 90.68, 94.38
R / Rfree (%) 19 / 21.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66 (pdb code 4g2n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66, PDB code: 4g2n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4g2n

Go back to Chlorine Binding Sites List in 4g2n
Chlorine binding site 1 out of 2 in the Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:42.0
occ:1.00
N D:GLY149 3.3 33.2 1.0
N B:GLU297 3.4 36.8 1.0
CG B:GLU297 3.4 47.6 1.0
NH1 D:ARG153 3.5 41.2 1.0
CB B:GLU297 3.8 43.0 1.0
N B:HIS296 3.8 36.3 1.0
CB B:THR295 3.8 33.7 1.0
CA D:MSE148 3.9 36.6 1.0
O D:GLY147 3.9 32.2 1.0
CB B:HIS296 4.0 40.9 1.0
C D:MSE148 4.1 35.4 1.0
OG1 B:THR295 4.1 35.0 1.0
CA B:GLU297 4.2 38.3 1.0
CA D:GLY149 4.2 33.6 1.0
CA B:HIS296 4.2 38.6 1.0
C B:HIS296 4.3 37.9 1.0
NH2 D:ARG153 4.3 42.0 1.0
CZ D:ARG153 4.4 42.4 1.0
C B:THR295 4.5 34.9 1.0
CD B:GLU297 4.5 55.4 1.0
OE2 B:GLU297 4.6 56.2 1.0
O B:HOH528 4.6 36.5 1.0
CA B:THR295 4.6 33.1 1.0
CD2 B:HIS296 4.7 47.4 1.0
CG B:HIS296 4.8 44.7 1.0
C D:GLY147 4.8 31.9 1.0
O D:GLY149 4.8 34.3 1.0
CG2 B:THR295 4.8 31.8 1.0
CB D:MSE148 4.8 43.5 1.0
N D:MSE148 4.8 33.7 1.0

Chlorine binding site 2 out of 2 in 4g2n

Go back to Chlorine Binding Sites List in 4g2n
Chlorine binding site 2 out of 2 in the Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:47.1
occ:1.00
N D:LEU106 3.2 31.3 1.0
N D:SER107 3.3 31.8 1.0
CA D:ASP104 3.5 34.2 1.0
C D:ASP104 3.5 33.0 1.0
N D:VAL105 3.6 30.5 1.0
CB D:SER107 3.8 31.0 1.0
O D:HOH636 3.8 37.8 1.0
O D:HOH531 3.9 47.9 1.0
CA D:LEU106 3.9 31.9 1.0
C D:LEU106 3.9 31.7 1.0
CA D:SER107 4.0 30.3 1.0
O D:ASP104 4.0 32.0 1.0
CG1 D:ILE163 4.1 36.6 1.0
CB D:LEU106 4.1 31.8 1.0
OD1 D:ASP104 4.1 43.0 1.0
N D:ASP104 4.1 33.5 1.0
C D:VAL105 4.2 31.8 1.0
CD1 D:ILE163 4.3 36.1 1.0
OG D:SER107 4.4 33.7 1.0
CA D:VAL105 4.4 31.2 1.0
CB D:ASP104 4.7 36.3 1.0
CG D:ASP104 4.7 39.7 1.0
CB D:ARG162 4.8 45.3 1.0
CG D:ARG162 4.8 49.8 1.0
CD1 D:LEU106 4.9 33.8 1.0
O D:LEU106 4.9 30.5 1.0

Reference:

V.N.Malashkevich, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garforth, A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.Lim, A.Celikgil, G.Villegas, B.Evans, W.Zenchek, J.Love, A.Fiser, K.Khafizov, R.Seidel, J.B.Bonanno, S.C.Almo. Crystal Structure of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. JS6 66 To Be Published.
Page generated: Fri Jul 11 15:29:01 2025

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