Chlorine in PDB 4g3j: Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Enzymatic activity of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
All present enzymatic activity of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]:
1.14.13.70;
Protein crystallography data
The structure of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)], PDB code: 4g3j
was solved by
T.Y.Hargrove,
Z.Wawrzak,
M.R.Waterman,
G.I.Lepesheva,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.93 /
1.83
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
60.013,
79.480,
116.353,
74.59,
79.28,
68.48
|
R / Rfree (%)
|
16.9 /
22
|
Other elements in 4g3j:
The structure of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
(pdb code 4g3j). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)], PDB code: 4g3j:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 4g3j
Go back to
Chlorine Binding Sites List in 4g3j
Chlorine binding site 1 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:24.2
occ:1.00
|
CLC
|
A:VNT502
|
0.0
|
24.2
|
1.0
|
CBA
|
A:VNT502
|
1.7
|
22.0
|
1.0
|
CAQ
|
A:VNT502
|
2.6
|
21.5
|
1.0
|
CBE
|
A:VNT502
|
2.7
|
21.5
|
1.0
|
CBH
|
A:VNT502
|
3.0
|
21.6
|
1.0
|
CD1
|
A:PHE290
|
3.4
|
26.8
|
1.0
|
N
|
A:ALA291
|
3.5
|
23.6
|
1.0
|
CA
|
A:ALA291
|
3.6
|
24.4
|
1.0
|
CB
|
A:ALA291
|
3.7
|
24.2
|
1.0
|
O
|
A:ALA287
|
3.8
|
23.2
|
1.0
|
CAZ
|
A:VNT502
|
3.9
|
22.0
|
1.0
|
CE
|
A:MET106
|
3.9
|
23.4
|
1.0
|
NAW
|
A:VNT502
|
3.9
|
21.7
|
1.0
|
CB
|
A:PHE290
|
3.9
|
24.1
|
1.0
|
CAN
|
A:VNT502
|
3.9
|
21.9
|
1.0
|
CG
|
A:PHE290
|
3.9
|
28.2
|
1.0
|
CZ
|
A:PHE110
|
4.0
|
23.3
|
1.0
|
C
|
A:PHE290
|
4.1
|
27.5
|
1.0
|
CE1
|
A:PHE290
|
4.2
|
26.5
|
1.0
|
CE1
|
A:PHE110
|
4.2
|
22.8
|
1.0
|
CAR
|
A:VNT502
|
4.2
|
22.2
|
1.0
|
OAA
|
A:VNT502
|
4.3
|
22.8
|
1.0
|
O
|
A:HOH780
|
4.4
|
37.1
|
1.0
|
CAI
|
A:VNT502
|
4.4
|
21.8
|
1.0
|
NBI
|
A:VNT502
|
4.5
|
22.4
|
1.0
|
CAY
|
A:VNT502
|
4.5
|
21.9
|
1.0
|
NAT
|
A:VNT502
|
4.6
|
22.8
|
1.0
|
C
|
A:ALA287
|
4.7
|
20.3
|
1.0
|
CA
|
A:PHE290
|
4.7
|
22.4
|
1.0
|
CA
|
A:ALA287
|
4.7
|
19.2
|
1.0
|
O
|
A:PHE290
|
4.8
|
23.9
|
1.0
|
SD
|
A:MET106
|
5.0
|
26.7
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 4g3j
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Chlorine Binding Sites List in 4g3j
Chlorine binding site 2 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:24.5
occ:1.00
|
CLB
|
A:VNT502
|
0.0
|
24.5
|
1.0
|
CAZ
|
A:VNT502
|
1.7
|
22.0
|
1.0
|
CAQ
|
A:VNT502
|
2.7
|
21.5
|
1.0
|
CAI
|
A:VNT502
|
2.7
|
21.8
|
1.0
|
CMD
|
A:HEM501
|
3.6
|
22.6
|
1.0
|
OH
|
A:TYR116
|
3.7
|
27.0
|
1.0
|
CE2
|
A:TYR116
|
3.8
|
29.9
|
1.0
|
CB
|
A:ALA287
|
3.9
|
21.7
|
1.0
|
CBA
|
A:VNT502
|
4.0
|
22.0
|
1.0
|
CAN
|
A:VNT502
|
4.0
|
21.9
|
1.0
|
CZ
|
A:TYR116
|
4.1
|
30.8
|
1.0
|
CD2
|
A:LEU127
|
4.1
|
30.6
|
1.0
|
CAD
|
A:HEM501
|
4.2
|
23.4
|
1.0
|
C2D
|
A:HEM501
|
4.2
|
19.9
|
1.0
|
CZ
|
A:PHE110
|
4.4
|
23.3
|
1.0
|
C3D
|
A:HEM501
|
4.4
|
20.0
|
1.0
|
CE2
|
A:PHE110
|
4.5
|
25.7
|
1.0
|
CBE
|
A:VNT502
|
4.5
|
21.5
|
1.0
|
CB
|
A:ALA115
|
4.7
|
22.7
|
1.0
|
CD2
|
A:TYR116
|
4.8
|
26.9
|
1.0
|
CA
|
A:ALA287
|
4.9
|
19.2
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 4g3j
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Chlorine Binding Sites List in 4g3j
Chlorine binding site 3 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:24.4
occ:1.00
|
CLC
|
B:VNT502
|
0.0
|
24.4
|
1.0
|
CBA
|
B:VNT502
|
1.7
|
20.8
|
1.0
|
CAQ
|
B:VNT502
|
2.6
|
20.9
|
1.0
|
CBE
|
B:VNT502
|
2.6
|
20.9
|
1.0
|
CBH
|
B:VNT502
|
2.9
|
22.1
|
1.0
|
CB
|
B:PHE290
|
3.4
|
28.9
|
1.0
|
N
|
B:ALA291
|
3.6
|
19.7
|
1.0
|
NAW
|
B:VNT502
|
3.6
|
21.8
|
1.0
|
CA
|
B:ALA291
|
3.7
|
21.8
|
1.0
|
CZ
|
B:PHE110
|
3.8
|
31.8
|
1.0
|
CAZ
|
B:VNT502
|
3.9
|
20.7
|
1.0
|
CAN
|
B:VNT502
|
3.9
|
21.7
|
1.0
|
C
|
B:PHE290
|
3.9
|
26.6
|
1.0
|
CB
|
B:ALA291
|
3.9
|
18.0
|
1.0
|
OAA
|
B:VNT502
|
4.0
|
23.3
|
1.0
|
O
|
B:ALA287
|
4.1
|
21.7
|
1.0
|
CAY
|
B:VNT502
|
4.1
|
22.5
|
1.0
|
CE
|
B:MET106
|
4.1
|
32.7
|
1.0
|
CAR
|
B:VNT502
|
4.3
|
22.4
|
1.0
|
CA
|
B:PHE290
|
4.3
|
24.3
|
1.0
|
CD2
|
B:PHE290
|
4.4
|
39.7
|
1.0
|
CAI
|
B:VNT502
|
4.4
|
22.2
|
1.0
|
CG
|
B:PHE290
|
4.4
|
29.5
|
1.0
|
CE1
|
B:PHE110
|
4.5
|
28.9
|
1.0
|
O
|
B:PHE290
|
4.5
|
30.8
|
1.0
|
NBI
|
B:VNT502
|
4.6
|
21.7
|
1.0
|
NAT
|
B:VNT502
|
4.7
|
21.4
|
1.0
|
SD
|
B:MET106
|
4.8
|
33.7
|
1.0
|
CE2
|
B:PHE110
|
4.9
|
28.9
|
1.0
|
O
|
B:HOH805
|
4.9
|
34.0
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 4g3j
Go back to
Chlorine Binding Sites List in 4g3j
Chlorine binding site 4 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:25.1
occ:1.00
|
CLB
|
B:VNT502
|
0.0
|
25.1
|
1.0
|
CAZ
|
B:VNT502
|
1.7
|
20.7
|
1.0
|
CAQ
|
B:VNT502
|
2.7
|
20.9
|
1.0
|
CAI
|
B:VNT502
|
2.7
|
22.2
|
1.0
|
CBA
|
B:VNT502
|
4.0
|
20.8
|
1.0
|
CAN
|
B:VNT502
|
4.0
|
21.7
|
1.0
|
CMD
|
B:HEM501
|
4.0
|
26.8
|
1.0
|
CB
|
B:ALA287
|
4.1
|
20.6
|
1.0
|
CE2
|
B:TYR116
|
4.2
|
37.7
|
1.0
|
CD2
|
B:LEU127
|
4.3
|
45.3
|
1.0
|
CE2
|
B:PHE110
|
4.3
|
28.9
|
1.0
|
OH
|
B:TYR116
|
4.3
|
35.2
|
1.0
|
CZ
|
B:TYR116
|
4.4
|
35.3
|
1.0
|
CB
|
B:ALA115
|
4.4
|
27.5
|
1.0
|
CBE
|
B:VNT502
|
4.5
|
20.9
|
1.0
|
CZ
|
B:PHE110
|
4.5
|
31.8
|
1.0
|
C2D
|
B:HEM501
|
4.7
|
23.7
|
1.0
|
CAD
|
B:HEM501
|
4.8
|
21.9
|
1.0
|
CD2
|
B:TYR116
|
4.8
|
36.4
|
1.0
|
CD2
|
B:PHE110
|
4.9
|
28.1
|
1.0
|
C3D
|
B:HEM501
|
5.0
|
22.4
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 4g3j
Go back to
Chlorine Binding Sites List in 4g3j
Chlorine binding site 5 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl502
b:25.0
occ:1.00
|
CLC
|
C:VNT502
|
0.0
|
25.0
|
1.0
|
CBA
|
C:VNT502
|
1.6
|
22.3
|
1.0
|
CAQ
|
C:VNT502
|
2.6
|
22.3
|
1.0
|
CBE
|
C:VNT502
|
2.6
|
22.6
|
1.0
|
CBH
|
C:VNT502
|
3.0
|
22.2
|
1.0
|
O
|
C:HOH723
|
3.5
|
40.2
|
1.0
|
NAW
|
C:VNT502
|
3.6
|
22.1
|
1.0
|
CB
|
C:PHE290
|
3.6
|
26.5
|
1.0
|
N
|
C:ALA291
|
3.7
|
24.5
|
1.0
|
CZ
|
C:PHE110
|
3.8
|
32.7
|
1.0
|
C
|
C:PHE290
|
3.8
|
31.9
|
1.0
|
CE
|
C:MET106
|
3.9
|
28.5
|
1.0
|
CAZ
|
C:VNT502
|
3.9
|
22.9
|
1.0
|
CAN
|
C:VNT502
|
3.9
|
24.2
|
1.0
|
OAA
|
C:VNT502
|
3.9
|
24.7
|
1.0
|
CA
|
C:ALA291
|
4.0
|
24.6
|
1.0
|
CAY
|
C:VNT502
|
4.0
|
22.2
|
1.0
|
O
|
C:PHE290
|
4.1
|
31.4
|
1.0
|
SD
|
C:MET106
|
4.3
|
31.1
|
1.0
|
CB
|
C:ALA291
|
4.3
|
25.9
|
1.0
|
CAR
|
C:VNT502
|
4.3
|
23.0
|
1.0
|
CE1
|
C:PHE110
|
4.4
|
30.6
|
1.0
|
CA
|
C:PHE290
|
4.4
|
27.4
|
1.0
|
O
|
C:ALA287
|
4.4
|
23.7
|
1.0
|
CAI
|
C:VNT502
|
4.4
|
23.2
|
1.0
|
CG
|
C:PHE290
|
4.7
|
28.7
|
1.0
|
NAT
|
C:VNT502
|
4.7
|
22.7
|
1.0
|
NBI
|
C:VNT502
|
4.7
|
21.9
|
1.0
|
CD2
|
C:PHE290
|
4.8
|
33.6
|
1.0
|
CE2
|
C:TYR103
|
4.8
|
30.0
|
1.0
|
O
|
C:HOH719
|
4.9
|
35.2
|
1.0
|
CE2
|
C:PHE110
|
4.9
|
36.3
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 4g3j
Go back to
Chlorine Binding Sites List in 4g3j
Chlorine binding site 6 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl502
b:27.5
occ:1.00
|
CLB
|
C:VNT502
|
0.0
|
27.5
|
1.0
|
CAZ
|
C:VNT502
|
1.7
|
22.9
|
1.0
|
CAQ
|
C:VNT502
|
2.7
|
22.3
|
1.0
|
CAI
|
C:VNT502
|
2.7
|
23.2
|
1.0
|
CMD
|
C:HEM501
|
3.7
|
35.9
|
1.0
|
CB
|
C:ALA287
|
3.9
|
28.1
|
1.0
|
CE2
|
C:TYR116
|
4.0
|
44.5
|
1.0
|
CBA
|
C:VNT502
|
4.0
|
22.3
|
1.0
|
CAN
|
C:VNT502
|
4.0
|
24.2
|
1.0
|
CD2
|
C:LEU127
|
4.2
|
57.2
|
1.0
|
C2D
|
C:HEM501
|
4.5
|
30.3
|
1.0
|
CB
|
C:ALA115
|
4.5
|
36.5
|
1.0
|
CBE
|
C:VNT502
|
4.5
|
22.6
|
1.0
|
CZ
|
C:PHE110
|
4.6
|
32.7
|
1.0
|
OH
|
C:TYR116
|
4.6
|
41.3
|
1.0
|
CZ
|
C:TYR116
|
4.6
|
47.4
|
1.0
|
CE2
|
C:PHE110
|
4.6
|
36.3
|
1.0
|
CD2
|
C:TYR116
|
4.6
|
49.1
|
1.0
|
CA
|
C:ALA287
|
4.9
|
27.2
|
1.0
|
O
|
C:ALA287
|
5.0
|
23.7
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 4g3j
Go back to
Chlorine Binding Sites List in 4g3j
Chlorine binding site 7 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl502
b:25.6
occ:1.00
|
CLC
|
D:VNT502
|
0.0
|
25.6
|
1.0
|
CBA
|
D:VNT502
|
1.7
|
22.4
|
1.0
|
CAQ
|
D:VNT502
|
2.6
|
23.8
|
1.0
|
CBE
|
D:VNT502
|
2.7
|
22.3
|
1.0
|
CBH
|
D:VNT502
|
3.0
|
21.9
|
1.0
|
CB
|
D:PHE290
|
3.3
|
33.9
|
1.0
|
N
|
D:ALA291
|
3.6
|
25.5
|
1.0
|
NAW
|
D:VNT502
|
3.6
|
21.7
|
1.0
|
CA
|
D:ALA291
|
3.8
|
24.9
|
1.0
|
OAA
|
D:VNT502
|
3.8
|
24.0
|
1.0
|
C
|
D:PHE290
|
3.9
|
35.7
|
1.0
|
CAZ
|
D:VNT502
|
3.9
|
22.6
|
1.0
|
CAN
|
D:VNT502
|
3.9
|
23.3
|
1.0
|
CE
|
D:MET106
|
4.0
|
38.9
|
1.0
|
CAY
|
D:VNT502
|
4.0
|
23.1
|
1.0
|
CB
|
D:ALA291
|
4.1
|
25.6
|
1.0
|
CZ
|
D:PHE110
|
4.2
|
27.5
|
1.0
|
O
|
D:ALA287
|
4.2
|
26.4
|
1.0
|
CG
|
D:PHE290
|
4.2
|
38.5
|
1.0
|
CA
|
D:PHE290
|
4.2
|
33.5
|
1.0
|
CD2
|
D:PHE290
|
4.3
|
39.4
|
1.0
|
CAR
|
D:VNT502
|
4.3
|
22.4
|
1.0
|
CAI
|
D:VNT502
|
4.4
|
23.2
|
1.0
|
O
|
D:PHE290
|
4.4
|
36.5
|
1.0
|
NAT
|
D:VNT502
|
4.5
|
23.6
|
1.0
|
O
|
D:HOH714
|
4.6
|
31.9
|
1.0
|
SD
|
D:MET106
|
4.6
|
34.8
|
1.0
|
CE1
|
D:PHE110
|
4.6
|
31.5
|
1.0
|
NBI
|
D:VNT502
|
4.7
|
22.7
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 4g3j
Go back to
Chlorine Binding Sites List in 4g3j
Chlorine binding site 8 out
of 8 in the Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Sterol 14-Alpha Demethylase (CYP51) From Trypanosoma Brucei in Complex with the Vni Derivative (R)-N-(1-(2,4-Dichlorophenyl)-2-(1H-1,2,4- Triazol-1-Yl)Ethyl)-4-(5-Phenyl-1,3,4-Oxadiazol-2-Yl)Benzamide [R- Vni-Triazole (Vnt)] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl502
b:27.1
occ:1.00
|
CLB
|
D:VNT502
|
0.0
|
27.1
|
1.0
|
CAZ
|
D:VNT502
|
1.7
|
22.6
|
1.0
|
CAI
|
D:VNT502
|
2.6
|
23.2
|
1.0
|
CAQ
|
D:VNT502
|
2.7
|
23.8
|
1.0
|
CB
|
D:ALA287
|
3.8
|
21.2
|
1.0
|
CAN
|
D:VNT502
|
3.9
|
23.3
|
1.0
|
CBA
|
D:VNT502
|
3.9
|
22.4
|
1.0
|
CE2
|
D:TYR116
|
4.0
|
41.2
|
1.0
|
CE2
|
D:PHE110
|
4.0
|
28.1
|
1.0
|
CZ
|
D:PHE110
|
4.1
|
27.5
|
1.0
|
CMD
|
D:HEM501
|
4.2
|
28.6
|
1.0
|
OH
|
D:TYR116
|
4.4
|
39.1
|
1.0
|
CZ
|
D:TYR116
|
4.4
|
37.4
|
1.0
|
CBE
|
D:VNT502
|
4.4
|
22.3
|
1.0
|
CB
|
D:ALA115
|
4.5
|
25.4
|
1.0
|
CD2
|
D:LEU127
|
4.5
|
32.9
|
1.0
|
CD2
|
D:TYR116
|
4.7
|
41.1
|
1.0
|
CD2
|
D:PHE110
|
4.7
|
28.9
|
1.0
|
CE1
|
D:PHE110
|
4.8
|
31.5
|
1.0
|
CA
|
D:ALA287
|
4.8
|
23.6
|
1.0
|
C2D
|
D:HEM501
|
4.9
|
24.9
|
1.0
|
CAD
|
D:HEM501
|
4.9
|
29.8
|
1.0
|
|
Reference:
G.I.Lepesheva,
T.Y.Hargrove,
G.Rachakonda,
Z.Wawrzak,
S.Pomel,
S.Cojean,
P.N.Nde,
W.D.Nes,
C.W.Locuson,
M.W.Calcutt,
M.R.Waterman,
J.S.Daniels,
P.M.Loiseau,
F.Villalta.
Vfv As A New Effective CYP51 Structure-Derived Drug Candidate For Chagas Disease and Visceral Leishmaniasis. J Infect Dis V. 212 1439 2015.
ISSN: ISSN 1537-6613
PubMed: 25883390
DOI: 10.1093/INFDIS/JIV228
Page generated: Sun Jul 21 14:16:24 2024
|