Chlorine in PDB 4g9p: Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus
Enzymatic activity of Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus
All present enzymatic activity of Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus:
1.17.7.1;
Protein crystallography data
The structure of Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus, PDB code: 4g9p
was solved by
I.Rekittke,
H.Jomaa,
U.Ermler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.78 /
1.55
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.650,
63.650,
442.270,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17.7 /
20.3
|
Other elements in 4g9p:
The structure of Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus
(pdb code 4g9p). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus, PDB code: 4g9p:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 4g9p
Go back to
Chlorine Binding Sites List in 4g9p
Chlorine binding site 1 out
of 2 in the Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl504
b:19.1
occ:1.00
|
HD22
|
A:ASN31
|
2.3
|
17.8
|
1.0
|
O
|
A:HOH717
|
3.1
|
29.0
|
1.0
|
K
|
A:K505
|
3.1
|
18.9
|
1.0
|
HB2
|
A:ARG271
|
3.1
|
21.1
|
1.0
|
ND2
|
A:ASN31
|
3.2
|
14.8
|
1.0
|
O
|
A:HOH621
|
3.2
|
23.4
|
1.0
|
HG2
|
A:PRO265
|
3.4
|
17.5
|
1.0
|
HD21
|
A:ASN31
|
3.6
|
17.8
|
1.0
|
H
|
A:ARG271
|
3.6
|
21.6
|
1.0
|
HB2
|
A:PRO265
|
3.7
|
18.7
|
1.0
|
HB3
|
A:PRO265
|
3.8
|
18.7
|
1.0
|
HD3
|
A:ARG271
|
3.9
|
18.6
|
1.0
|
N
|
A:ARG271
|
3.9
|
18.0
|
1.0
|
HA
|
A:ARG271
|
4.0
|
16.6
|
1.0
|
CB
|
A:ARG271
|
4.0
|
17.6
|
1.0
|
CB
|
A:PRO265
|
4.1
|
15.6
|
1.0
|
CG
|
A:ASN31
|
4.1
|
14.3
|
1.0
|
CG
|
A:PRO265
|
4.1
|
14.6
|
1.0
|
OD1
|
A:ASN31
|
4.2
|
16.9
|
1.0
|
CA
|
A:ARG271
|
4.2
|
13.8
|
1.0
|
O
|
A:GLU269
|
4.3
|
21.1
|
1.0
|
HE22
|
A:GLN43
|
4.3
|
19.8
|
1.0
|
HA
|
A:PRO270
|
4.4
|
27.8
|
1.0
|
HG3
|
A:PRO265
|
4.5
|
17.5
|
1.0
|
HB3
|
A:ARG271
|
4.6
|
21.1
|
1.0
|
O
|
A:HOH701
|
4.6
|
32.6
|
1.0
|
C
|
A:PRO270
|
4.6
|
14.1
|
1.0
|
HE21
|
A:GLN43
|
4.7
|
19.8
|
1.0
|
CD
|
A:ARG271
|
4.8
|
15.5
|
1.0
|
NE2
|
A:GLN43
|
4.8
|
16.5
|
1.0
|
CG
|
A:ARG271
|
4.9
|
17.7
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 4g9p
Go back to
Chlorine Binding Sites List in 4g9p
Chlorine binding site 2 out
of 2 in the Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of the Gcpe-Mecpp (Ispg) Complex From Thermus Thermophilus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl507
b:12.2
occ:0.58
|
HE21
|
A:GLN27
|
2.2
|
20.7
|
1.0
|
HE
|
A:ARG56
|
2.3
|
16.9
|
1.0
|
HH21
|
A:ARG56
|
2.4
|
17.6
|
1.0
|
HG3
|
A:ARG260
|
2.5
|
15.9
|
1.0
|
NE2
|
A:GLN27
|
3.0
|
17.2
|
1.0
|
NE
|
A:ARG56
|
3.1
|
14.1
|
1.0
|
HG3
|
A:GLN27
|
3.1
|
20.2
|
1.0
|
HB3
|
A:ARG56
|
3.1
|
14.7
|
1.0
|
NH2
|
A:ARG56
|
3.2
|
14.7
|
1.0
|
HB2
|
A:MET29
|
3.3
|
18.0
|
1.0
|
O
|
A:SER28
|
3.4
|
16.4
|
1.0
|
HE1
|
A:HIS227
|
3.4
|
18.8
|
1.0
|
HB2
|
A:ARG260
|
3.4
|
14.1
|
1.0
|
HB2
|
A:ARG56
|
3.4
|
14.7
|
1.0
|
HE22
|
A:GLN27
|
3.5
|
20.7
|
1.0
|
CG
|
A:ARG260
|
3.5
|
13.3
|
1.0
|
C
|
A:SER28
|
3.5
|
15.5
|
1.0
|
CZ
|
A:ARG56
|
3.6
|
13.8
|
1.0
|
HA
|
A:SER28
|
3.7
|
15.0
|
1.0
|
CB
|
A:ARG56
|
3.7
|
12.2
|
1.0
|
H
|
A:SER28
|
3.8
|
14.4
|
1.0
|
N
|
A:SER28
|
3.8
|
12.0
|
1.0
|
HB2
|
A:GLN27
|
3.8
|
19.6
|
1.0
|
CG
|
A:GLN27
|
3.8
|
16.8
|
1.0
|
CD
|
A:GLN27
|
3.9
|
26.3
|
1.0
|
CA
|
A:SER28
|
3.9
|
12.5
|
1.0
|
HH22
|
A:ARG56
|
3.9
|
17.6
|
1.0
|
CB
|
A:ARG260
|
4.0
|
11.8
|
1.0
|
HG2
|
A:ARG260
|
4.0
|
15.9
|
1.0
|
H
|
A:ARG56
|
4.1
|
15.2
|
1.0
|
N
|
A:MET29
|
4.1
|
11.7
|
1.0
|
HD2
|
A:ARG260
|
4.1
|
18.1
|
1.0
|
CD
|
A:ARG56
|
4.2
|
13.6
|
1.0
|
CB
|
A:MET29
|
4.2
|
15.0
|
1.0
|
CE1
|
A:HIS227
|
4.3
|
15.7
|
1.0
|
C
|
A:GLN27
|
4.3
|
11.2
|
1.0
|
CB
|
A:GLN27
|
4.3
|
16.4
|
1.0
|
HB3
|
A:ARG260
|
4.3
|
14.1
|
1.0
|
CD
|
A:ARG260
|
4.3
|
15.1
|
1.0
|
HD3
|
A:ARG56
|
4.3
|
16.3
|
1.0
|
HA
|
A:MET29
|
4.4
|
15.8
|
1.0
|
CA
|
A:MET29
|
4.5
|
13.1
|
1.0
|
CG
|
A:ARG56
|
4.6
|
14.8
|
1.0
|
HH21
|
A:ARG141
|
4.6
|
26.2
|
1.0
|
H
|
A:MET29
|
4.6
|
14.0
|
1.0
|
HG2
|
A:GLN27
|
4.6
|
20.2
|
1.0
|
N
|
A:ARG56
|
4.7
|
12.7
|
1.0
|
NE
|
A:ARG260
|
4.7
|
13.1
|
1.0
|
HE2
|
A:HIS227
|
4.7
|
18.3
|
1.0
|
HB3
|
A:MET29
|
4.7
|
18.0
|
1.0
|
O
|
A:HOH975
|
4.7
|
13.6
|
1.0
|
HH11
|
A:ARG260
|
4.7
|
16.9
|
1.0
|
O
|
A:GLN27
|
4.8
|
15.3
|
1.0
|
HG2
|
A:ARG56
|
4.8
|
17.7
|
1.0
|
CA
|
A:ARG56
|
4.9
|
13.0
|
1.0
|
NH1
|
A:ARG56
|
4.9
|
14.6
|
1.0
|
NE2
|
A:HIS227
|
4.9
|
15.3
|
1.0
|
CA
|
A:GLN27
|
4.9
|
10.8
|
1.0
|
HD2
|
A:ARG56
|
5.0
|
16.3
|
1.0
|
NH1
|
A:ARG260
|
5.0
|
14.1
|
1.0
|
CZ
|
A:ARG260
|
5.0
|
12.1
|
1.0
|
|
Reference:
I.Rekittke,
H.Jomaa,
U.Ermler.
Structure of the Gcpe (Ispg)-Mecpp Complex From Thermus Thermophilus. Febs Lett. V. 586 3452 2012.
ISSN: ISSN 0014-5793
PubMed: 22967895
DOI: 10.1016/J.FEBSLET.2012.07.070
Page generated: Sun Jul 21 14:23:57 2024
|