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Chlorine in PDB 4gbt: Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles

Protein crystallography data

The structure of Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles, PDB code: 4gbt was solved by S.Halder, H.-J.Nam, L.Govindasamy, M.Vogel, C.Dinsart, N.Salome, R.Mckenna, M.Agbandje-Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.20
Space group P 1 21 1 1
Cell size a, b, c (Å), α, β, γ (°) 255.200, 350.100, 272.100, 90.00, 90.12, 90.00
R / Rfree (%) 25.6 / 25.9

Other elements in 4gbt:

The structure of Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles (pdb code 4gbt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles, PDB code: 4gbt:

Chlorine binding site 1 out of 1 in 4gbt

Go back to Chlorine Binding Sites List in 4gbt
Chlorine binding site 1 out of 1 in the Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Replication Defective Particles within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:52.4
occ:1.00
NE2 A:GLN148 3.5 51.3 1.0
OG1 A:THR272 3.7 55.9 1.0
CB A:THR272 3.7 54.8 1.0
CG2 A:THR272 4.1 55.2 1.0
CB A:TYR275 4.4 45.0 1.0
CG A:GLN148 4.4 50.2 1.0
CB A:PRO500 4.4 50.7 1.0
CD A:GLN148 4.4 50.3 1.0
O A:LEU146 4.5 50.3 1.0
CD2 A:LEU146 4.6 45.6 1.0
O A:GLY501 4.6 55.7 1.0
CG A:LEU146 4.7 45.7 1.0
O A:GLY273 4.7 55.2 1.0
N A:GLY501 4.7 54.1 1.0
CA A:PRO500 5.0 52.4 1.0

Reference:

S.Halder, H.J.Nam, L.Govindasamy, M.Vogel, C.Dinsart, N.Salome, R.Mckenna, M.Agbandje-Mckenna. Structural Characterization of H-1 Parvovirus: Comparison of Infectious Virions to Empty Capsids. J.Virol. V. 87 5128 2013.
ISSN: ISSN 0022-538X
PubMed: 23449783
DOI: 10.1128/JVI.03416-12
Page generated: Sat Dec 12 10:39:06 2020

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