Chlorine in PDB 4gcd: Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2

Enzymatic activity of Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2

All present enzymatic activity of Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2:
3.2.1.17;

Protein crystallography data

The structure of Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2, PDB code: 4gcd was solved by J.R.Helliwell, S.W.M.Tanley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	35.74 / 2.80
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	79.863, 79.863, 37.802, 90.00, 90.00, 90.00
*R / R_free (%)*	17.5 / 24

Other elements in 4gcd:

The structure of Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2 also contains other interesting chemical elements:

Platinum

(Pt)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2 (pdb code 4gcd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2, PDB code: 4gcd:

Chlorine binding site 1 out of 1 in 4gcd

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Chlorine Binding Sites List in 4gcd

Chlorine binding site 1 out of 1 in the Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature X-Ray Diffraction Study of A 6-Fold Molar Excess of A Cisplatin/Carboplatin Mixture Binding to Hewl, Dataset 2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl204 b:45.6 occ:0.66	CL2	A:CPT204	0.0	45.6	0.7
	PT1	A:CPT204	2.4	64.2	0.7
	OD1	A:ASN93	2.7	36.2	1.0
	N2	A:CPT204	3.0	58.9	0.7
	ND1	A:HIS15	3.3	49.2	1.0
	CG	A:ASN93	3.8	34.9	1.0
	CG1	A:VAL92	3.9	25.4	1.0
	NZ	A:LYS96	3.9	37.8	1.0
	O	A:HIS15	3.9	40.1	1.0
	CG	A:HIS15	4.3	46.2	1.0
	CG2	A:THR89	4.3	33.0	1.0
	CE1	A:HIS15	4.3	50.1	1.0
	ND2	A:ASN93	4.3	37.4	1.0
	CB	A:HIS15	4.3	43.6	1.0
	O	A:THR89	4.4	29.9	1.0
	CA	A:HIS15	4.5	43.0	1.0
	C	A:HIS15	4.6	41.4	1.0
	CB	A:VAL92	4.6	24.8	1.0
	N	A:ASN93	4.7	27.2	1.0
	CE	A:LYS96	4.7	35.5	1.0
	CA	A:THR89	5.0	30.3	1.0
	CB	A:ASN93	5.0	31.8	1.0

Reference:

J.R.Helliwell, S.W.Tanley. The Crystal Structure Analysis of the Relative Binding of Cisplatin and Carboplatin in A Mixture with Histidine in A Protein Studied at 100 and 300 K with Repeated X-Ray Irradiation. Acta Crystallogr.,Sect.D V. 69 121 2013.
ISSN: ISSN 0907-4449
PubMed: 23275170
DOI: 10.1107/S090744491204423X

Page generated: Sun Jul 21 14:28:52 2024

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