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Chlorine in PDB 4gd5: X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens

Protein crystallography data

The structure of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens, PDB code: 4gd5 was solved by J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, W.F.Anderson, A.Savchenko, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.07 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.888, 73.302, 56.415, 90.00, 102.09, 90.00
R / Rfree (%) 15 / 18.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens (pdb code 4gd5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens, PDB code: 4gd5:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 1 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:31.8
occ:1.00
O A:HOH569 2.9 41.1 1.0
O A:HOH570 3.2 33.4 1.0
N A:ASP157 3.3 16.9 1.0
O B:HOH681 3.6 39.3 1.0
O A:HOH547 3.8 30.8 1.0
CA A:GLU156 3.8 12.8 1.0
CG2 A:ILE182 3.9 19.9 1.0
CB A:GLU156 4.0 14.0 1.0
CB A:ASP157 4.0 20.9 1.0
C A:GLU156 4.0 16.1 1.0
CA A:ASP157 4.2 16.9 1.0
NH1 A:ARG162 4.7 15.3 1.0
O A:HOH700 4.7 44.4 1.0
CG1 A:ILE182 4.8 18.0 1.0
CB A:ILE182 4.9 16.9 1.0

Chlorine binding site 2 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 2 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:23.9
occ:1.00
CG A:GLN98 3.7 31.3 1.0
CA A:GLN98 4.1 22.5 1.0
CB A:GLN98 4.3 24.4 1.0
N A:GLN98 4.7 20.8 1.0
CD A:GLN98 4.8 45.7 1.0
NE2 A:GLN98 4.8 30.5 1.0

Chlorine binding site 3 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 3 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:14.5
occ:1.00
O B:HOH624 2.8 35.4 1.0
O B:HOH564 3.1 14.9 1.0
N B:ASP61 3.2 19.0 1.0
CB B:ASP61 3.4 24.6 1.0
C B:LYS59 3.6 18.7 1.0
CA B:LYS59 3.7 15.5 1.0
N B:PRO60 3.7 16.1 1.0
CA B:ASP61 3.8 20.5 1.0
CD B:LYS59 3.9 30.7 1.0
CB B:LYS59 4.0 17.1 1.0
CD B:PRO60 4.0 17.9 1.0
O B:LYS59 4.2 19.1 1.0
C B:PRO60 4.3 22.0 1.0
C B:ASP61 4.4 23.5 1.0
N B:VAL62 4.4 18.2 1.0
CA B:PRO60 4.5 16.2 1.0
CG2 B:VAL62 4.6 20.4 1.0
CG B:LYS59 4.6 26.2 1.0
CG B:ASP61 4.8 49.5 1.0

Chlorine binding site 4 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 4 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:26.8
occ:1.00
O B:HOH652 2.9 48.9 1.0
CG B:GLN98 3.7 36.0 1.0
CA B:GLN98 4.1 21.2 1.0
CB B:GLN98 4.2 23.4 1.0
N B:GLN98 4.6 19.5 1.0
CD B:GLN98 4.8 49.6 1.0
NE2 B:GLN98 4.9 26.3 1.0

Reference:

J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases. X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens To Be Published.
Page generated: Fri Jul 11 15:36:56 2025

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