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Chlorine in PDB 4giq: Crystal Structure of Mouse Rank Bound to Rankl

Protein crystallography data

The structure of Crystal Structure of Mouse Rank Bound to Rankl, PDB code: 4giq was solved by C.A.Nelson, M.W.-H.Wang, D.H.Fremont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.74 / 2.70
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 120.636, 120.636, 94.297, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.6

Other elements in 4giq:

The structure of Crystal Structure of Mouse Rank Bound to Rankl also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mouse Rank Bound to Rankl (pdb code 4giq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Mouse Rank Bound to Rankl, PDB code: 4giq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4giq

Go back to Chlorine Binding Sites List in 4giq
Chlorine binding site 1 out of 2 in the Crystal Structure of Mouse Rank Bound to Rankl


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mouse Rank Bound to Rankl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:46.0
occ:1.00
N A:ASP189 3.3 35.0 1.0
N A:HIS188 3.4 32.2 1.0
ND1 A:HIS188 3.5 44.5 1.0
NE A:ARG190 3.6 29.5 1.0
NH2 A:ARG190 3.7 37.0 1.0
CE1 A:HIS188 3.8 53.9 1.0
O A:ASP189 3.8 61.9 1.0
C A:ASP189 3.8 37.4 1.0
CB A:ARG190 3.8 30.8 1.0
CA A:TYR187 3.9 20.7 1.0
CZ A:ARG190 4.0 40.3 1.0
CA A:ASP189 4.0 43.3 1.0
CB A:TYR187 4.1 23.0 1.0
CD1 A:TYR187 4.1 22.4 1.0
C A:TYR187 4.1 21.7 1.0
CG A:HIS188 4.3 49.4 1.0
C A:HIS188 4.3 32.2 1.0
CA A:HIS188 4.3 31.9 1.0
N A:ARG190 4.3 37.1 1.0
CB A:ASP189 4.4 48.3 1.0
CG A:TYR187 4.5 22.2 1.0
NE2 A:HIS188 4.5 62.8 1.0
CD A:ARG190 4.6 36.9 1.0
CA A:ARG190 4.7 23.4 1.0
CD2 A:HIS188 4.8 37.2 1.0
CG A:ARG190 4.8 33.5 1.0
CB A:HIS188 4.9 30.3 1.0

Chlorine binding site 2 out of 2 in 4giq

Go back to Chlorine Binding Sites List in 4giq
Chlorine binding site 2 out of 2 in the Crystal Structure of Mouse Rank Bound to Rankl


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mouse Rank Bound to Rankl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:26.9
occ:1.00
NZ R:LYS56 3.0 49.5 1.0
NZ A:LYS194 3.2 18.7 1.0
CE A:LYS194 3.6 25.6 1.0
CE3 A:TRP192 3.9 31.3 1.0
O A:TRP192 4.0 23.3 1.0
CA A:TRP192 4.0 18.9 1.0
CD A:LYS194 4.0 13.3 1.0
CE R:LYS56 4.1 43.7 1.0
CB A:TRP192 4.3 17.2 1.0
C A:TRP192 4.4 19.3 1.0
CD2 A:TRP192 4.6 27.7 1.0
CZ3 A:TRP192 4.7 36.0 1.0
CG A:TRP192 4.8 24.4 1.0
O A:GLY191 4.9 40.0 1.0

Reference:

C.A.Nelson, J.T.Warren, M.W.Wang, S.L.Teitelbaum, D.H.Fremont. Rankl Employs Distinct Binding Modes to Engage Rank and the Osteoprotegerin Decoy Receptor. Structure V. 20 1971 2012.
ISSN: ISSN 0969-2126
PubMed: 23039992
DOI: 10.1016/J.STR.2012.08.030
Page generated: Sat Dec 12 10:39:46 2020

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