Chlorine in PDB 4gjw: Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein

The structure of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein, PDB code: 4gjw was solved by F.Yabukarski, N.Tarbouriech, M.Jamin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.75 / 3.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	59.500, 85.600, 122.600, 90.00, 94.70, 90.00
R / Rfree (%)	17.5 / 22.9

The binding sites of Chlorine atom in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein (pdb code 4gjw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein, PDB code: 4gjw:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:57.6 occ:1.00 N B:HIS491 3.4 56.1 1.0 CB B:PHE489 3.7 49.5 1.0 CB B:PRO490 3.7 51.1 1.0 N B:PRO490 3.9 53.5 1.0 CB B:HIS491 3.9 76.3 1.0 CD B:PRO490 3.9 55.4 1.0 CG B:PRO490 4.0 55.9 1.0 NH2 B:ARG602 4.1 61.1 1.0 CA B:PRO490 4.2 46.6 1.0 C B:PRO490 4.3 48.8 1.0 CA B:HIS491 4.3 57.1 1.0 C B:PHE489 4.3 55.4 1.0 CD2 B:PHE489 4.3 72.5 1.0 CG B:PHE489 4.5 70.5 1.0 CA B:PHE489 4.6 50.2 1.0 O B:PHE489 4.9 51.3 1.0

Chlorine binding site 2 out of 6 in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl601 b:61.8 occ:1.00 NE D:ARG532 3.0 38.6 1.0 ND1 D:HIS535 3.5 72.6 1.0 NH2 D:ARG532 3.6 66.0 1.0 CZ D:ARG532 3.8 55.5 1.0 CG A:GLU537 3.9 43.4 1.0 CG D:ARG532 3.9 36.2 1.0 CD D:ARG532 4.0 33.7 1.0 CD A:GLU537 4.0 59.7 1.0 CB A:GLU537 4.2 42.5 1.0 CB D:ARG532 4.2 31.6 1.0 OE1 A:GLU537 4.3 69.8 1.0 CE1 D:HIS535 4.4 77.3 1.0 CA D:ARG532 4.5 38.6 1.0 CG D:HIS535 4.5 51.6 1.0 OE2 A:GLU537 4.5 68.0 1.0 CB D:HIS535 4.6 39.3 1.0 O D:ARG532 4.7 43.4 1.0

Chlorine binding site 3 out of 6 in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl601 b:62.0 occ:1.00 NE F:ARG532 3.1 45.7 1.0 NH2 F:ARG532 3.6 64.0 1.0 ND1 F:HIS535 3.6 69.2 1.0 CZ F:ARG532 3.8 57.6 1.0 CG E:GLU537 3.8 44.6 1.0 CD E:GLU537 3.9 54.7 1.0 CG F:ARG532 4.0 34.8 1.0 CB E:GLU537 4.1 47.0 1.0 CD F:ARG532 4.1 30.5 1.0 OE1 E:GLU537 4.1 62.9 1.0 CB F:ARG532 4.2 31.7 1.0 CA F:ARG532 4.4 42.1 1.0 OE2 E:GLU537 4.4 65.9 1.0 CE1 F:HIS535 4.5 70.6 1.0 CG F:HIS535 4.5 58.1 1.0 CB F:HIS535 4.6 44.1 1.0 O F:ARG532 4.6 43.5 1.0 C F:ARG532 4.9 47.7 1.0 CG1 F:ILE536 5.0 38.8 1.0

Chlorine binding site 4 out of 6 in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl601 b:64.1 occ:1.00 NE G:ARG532 3.0 44.4 1.0 NH2 G:ARG532 3.5 61.6 1.0 ND1 G:HIS535 3.6 72.2 1.0 CZ G:ARG532 3.7 54.4 1.0 CG C:GLU537 3.8 51.2 1.0 CD C:GLU537 3.8 61.3 1.0 OE1 C:GLU537 3.9 63.4 1.0 CG G:ARG532 4.0 36.5 1.0 CB C:GLU537 4.0 44.9 1.0 CD G:ARG532 4.0 34.6 1.0 CB G:ARG532 4.2 28.1 1.0 OE2 C:GLU537 4.3 70.5 1.0 CA G:ARG532 4.4 34.7 1.0 CE1 G:HIS535 4.5 71.5 1.0 CG G:HIS535 4.5 56.1 1.0 CB G:HIS535 4.5 43.2 1.0 O G:ARG532 4.6 48.4 1.0 CG1 G:ILE536 4.7 32.1 1.0 C G:ARG532 5.0 42.9 1.0 NH1 G:ARG532 5.0 56.0 1.0

Chlorine binding site 5 out of 6 in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl602 b:71.3 occ:1.00 N G:HIS491 3.2 52.2 1.0 CB G:PRO490 3.6 47.5 1.0 CB G:HIS491 3.7 73.9 1.0 N G:PRO490 3.8 54.0 1.0 CD G:PRO490 3.9 48.5 1.0 CG G:PRO490 3.9 57.5 1.0 CB G:PHE489 4.0 51.6 1.0 CA G:PRO490 4.0 52.6 1.0 CA G:HIS491 4.0 58.1 1.0 C G:PRO490 4.0 48.3 1.0 C G:PHE489 4.2 61.8 1.0 O1 G:GOL603 4.7 0.5 1.0 C2 G:GOL603 4.7 0.8 1.0 O G:PHE489 4.7 53.7 1.0 CA G:PHE489 4.7 54.4 1.0 CG G:PHE489 4.9 75.7 1.0 O2 G:GOL603 4.9 95.7 1.0 C1 G:GOL603 5.0 0.9 1.0

Chlorine binding site 6 out of 6 in the Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the Tetramerization Domain of Nipah Virus Phosphoprotein within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl601 b:55.5 occ:1.00 NE H:ARG532 3.2 40.6 1.0 ND1 H:HIS535 3.5 69.3 1.0 NH2 H:ARG532 3.8 61.2 1.0 CG B:GLU537 3.9 42.1 1.0 CZ H:ARG532 4.0 52.7 1.0 CD B:GLU537 4.0 58.8 1.0 CG H:ARG532 4.1 37.6 1.0 CD H:ARG532 4.2 30.0 1.0 CB B:GLU537 4.3 42.7 1.0 OE1 B:GLU537 4.3 69.2 1.0 CB H:ARG532 4.4 34.2 1.0 CE1 H:HIS535 4.4 75.8 1.0 CG H:HIS535 4.4 52.4 1.0 CB H:HIS535 4.5 45.5 1.0 OE2 B:GLU537 4.5 74.1 1.0 CA H:ARG532 4.6 41.1 1.0 O H:ARG532 4.8 40.9 1.0

F.Yabukarski, N.Tarbouriech, M.Jamin. Nipah Virus Phosphoprotein Oligomerisation Domain To Be Published.