Chlorine in PDB 4gmj: Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1

The structure of Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1, PDB code: 4gmj was solved by P.Petit, O.Weichenrieder, L.Wohlbold, E.Izaurralde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	76.70 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	82.470, 101.740, 142.200, 90.00, 101.10, 90.00
R / Rfree (%)	21.4 / 24.9

The structure of Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1 also contains other interesting chemical elements:

Magnesium

(Mg)

8 atoms

The binding sites of Chlorine atom in the Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1 (pdb code 4gmj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1, PDB code: 4gmj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl304 b:38.7 occ:1.00 H B:ILE74 2.1 40.2 1.0 HA B:LYS73 2.5 38.9 1.0 HZ3 B:LYS167 2.6 44.8 1.0 HD11 B:ILE168 2.8 52.1 1.0 N B:ILE74 3.0 33.4 1.0 HG22 B:ILE74 3.1 38.7 1.0 HD3 B:LYS167 3.2 36.4 1.0 HD1 B:TYR164 3.3 37.3 1.0 CA B:LYS73 3.4 32.4 1.0 HB B:ILE74 3.4 37.0 1.0 NZ B:LYS167 3.5 37.2 1.0 HE1 B:TYR164 3.6 38.7 1.0 C B:LYS73 3.6 33.5 1.0 HG2 B:LYS73 3.7 49.2 1.0 CD1 B:ILE168 3.7 43.4 1.0 HG21 B:THR133 3.8 42.9 1.0 HB3 B:LYS73 3.8 43.1 1.0 O B:LEU72 3.8 42.5 1.0 CG2 B:ILE74 3.9 32.2 1.0 HD13 B:ILE168 3.9 52.1 1.0 HZ2 B:LYS167 3.9 44.8 1.0 CB B:ILE74 3.9 30.8 1.0 CD1 B:TYR164 4.0 31.1 1.0 HZ1 B:LYS167 4.0 44.8 1.0 CB B:LYS73 4.0 35.9 1.0 HE2 B:LYS167 4.0 47.2 1.0 CA B:ILE74 4.0 32.9 1.0 CD B:LYS167 4.0 30.3 1.0 CE B:LYS167 4.1 39.3 1.0 CE1 B:TYR164 4.1 32.2 1.0 HD12 B:ILE168 4.2 52.1 1.0 HG21 B:ILE74 4.3 38.7 1.0 HG1 B:THR133 4.3 44.9 1.0 CG B:LYS73 4.3 41.0 1.0 HD2 B:LYS167 4.4 36.4 1.0 N B:LYS73 4.4 30.1 1.0 HG12 B:ILE168 4.5 46.0 1.0 C B:LEU72 4.5 37.9 1.0 O B:HOH428 4.5 34.6 1.0 CG1 B:ILE168 4.6 38.2 1.0 HG23 B:ILE74 4.6 38.7 1.0 HA B:ILE74 4.6 39.5 1.0 CG2 B:THR133 4.7 35.7 1.0 HG13 B:ILE168 4.7 46.0 1.0 HG3 B:LYS73 4.8 49.2 1.0 O B:LYS73 4.8 36.7 1.0 HB2 B:LYS73 4.9 43.1 1.0

Chlorine binding site 2 out of 3 in the Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl304 b:44.9 occ:1.00 H D:ILE74 2.5 45.9 1.0 HZ3 D:LYS167 2.5 54.1 1.0 HA D:LYS73 2.7 49.3 1.0 HD3 D:LYS167 3.2 47.1 1.0 N D:ILE74 3.3 38.2 1.0 NZ D:LYS167 3.3 45.0 1.0 HG21 D:THR133 3.5 48.7 1.0 HG22 D:ILE74 3.5 46.4 1.0 HE2 D:LYS167 3.5 51.5 1.0 HD1 D:TYR164 3.5 49.4 1.0 CA D:LYS73 3.6 41.1 1.0 HZ1 D:LYS167 3.7 54.1 1.0 HE1 D:TYR164 3.7 47.5 1.0 HB D:ILE74 3.7 45.7 1.0 CE D:LYS167 3.8 42.9 1.0 HG2 D:LYS73 3.8 50.8 1.0 HB3 D:LYS73 3.9 52.3 1.0 HZ2 D:LYS167 3.9 54.1 1.0 C D:LYS73 4.0 39.9 1.0 CD D:LYS167 4.0 39.2 1.0 HG12 D:ILE168 4.0 53.2 1.0 HG1 D:THR133 4.0 56.8 1.0 O D:HOH427 4.0 43.7 1.0 O D:LEU72 4.1 48.4 1.0 CB D:LYS73 4.1 43.5 1.0 CG2 D:ILE74 4.2 38.7 1.0 CD1 D:TYR164 4.2 41.1 1.0 HG13 D:ILE168 4.2 53.2 1.0 CB D:ILE74 4.3 38.1 1.0 HD11 D:ILE168 4.3 58.5 1.0 CE1 D:TYR164 4.3 39.5 1.0 CA D:ILE74 4.4 39.3 1.0 CG2 D:THR133 4.4 40.5 1.0 CG D:LYS73 4.5 42.3 1.0 CG1 D:ILE168 4.5 44.3 1.0 HG21 D:ILE74 4.5 46.4 1.0 HD2 D:LYS167 4.6 47.1 1.0 N D:LYS73 4.6 39.9 1.0 O D:HOH411 4.7 43.3 1.0 HG2 D:LYS167 4.7 49.3 1.0 HE3 D:LYS167 4.7 51.5 1.0 OG1 D:THR133 4.8 47.3 1.0 C D:LEU72 4.8 44.1 1.0 HB D:THR133 4.8 49.9 1.0 HG3 D:LYS73 4.8 50.8 1.0 HG22 D:THR133 4.9 48.7 1.0 HG23 D:THR133 4.9 48.7 1.0 CD1 D:ILE168 4.9 48.7 1.0 CB D:THR133 4.9 41.5 1.0 CG D:LYS167 5.0 41.0 1.0 HG23 D:ILE74 5.0 46.4 1.0

Chlorine binding site 3 out of 3 in the Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Human NOT1 MIF4G Domain Co-Crystallized with CAF1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl304 b:39.7 occ:1.00 H F:ILE74 2.6 42.8 1.0 HA F:LYS73 2.8 48.5 1.0 HE2 F:LYS167 2.9 40.8 1.0 HZ3 F:LYS167 2.9 45.9 1.0 HG22 F:ILE74 3.0 40.5 1.0 N F:ILE74 3.4 35.6 1.0 NZ F:LYS167 3.4 38.2 1.0 HZ1 F:LYS167 3.4 45.9 1.0 HD1 F:TYR164 3.5 41.5 1.0 HG21 F:THR133 3.5 41.6 1.0 CE F:LYS167 3.5 33.9 1.0 CA F:LYS73 3.7 40.4 1.0 HD11 F:ILE168 3.8 46.5 1.0 HD3 F:LYS167 3.8 39.6 1.0 HG2 F:LYS73 3.8 47.1 1.0 HB3 F:LYS73 3.8 43.9 1.0 HE1 F:TYR164 3.9 43.1 1.0 HG13 F:ILE168 3.9 46.0 1.0 HB F:ILE74 3.9 40.4 1.0 O F:HOH432 3.9 42.1 1.0 CG2 F:ILE74 3.9 33.7 1.0 HG12 F:ILE168 4.0 46.0 1.0 HG1 F:THR133 4.0 38.2 1.0 C F:LYS73 4.0 39.4 1.0 CB F:LYS73 4.2 36.6 1.0 O F:LEU72 4.2 40.6 1.0 CD F:LYS167 4.2 33.0 1.0 HG21 F:ILE74 4.2 40.5 1.0 HZ2 F:LYS167 4.2 45.9 1.0 CD1 F:TYR164 4.3 34.5 1.0 CB F:ILE74 4.3 33.6 1.0 CG1 F:ILE168 4.3 38.3 1.0 HG2 F:LYS167 4.3 39.8 1.0 HE3 F:LYS167 4.4 40.8 1.0 CE1 F:TYR164 4.4 35.9 1.0 CA F:ILE74 4.4 35.8 1.0 CG2 F:THR133 4.5 34.6 1.0 CG F:LYS73 4.5 39.2 1.0 CD1 F:ILE168 4.5 38.7 1.0 HG23 F:ILE74 4.6 40.5 1.0 N F:LYS73 4.8 38.0 1.0 OG1 F:THR133 4.8 31.8 1.0 CG F:LYS167 4.8 33.1 1.0 HG23 F:THR133 4.9 41.6 1.0 HB F:THR133 4.9 34.6 1.0 C F:LEU72 4.9 37.1 1.0 HE2 F:LYS73 4.9 61.8 1.0 HG22 F:THR133 4.9 41.6 1.0 HG3 F:LYS73 4.9 47.1 1.0

A.P.Petit, L.Wohlbold, P.Bawankar, E.Huntzinger, S.Schmidt, E.Izaurralde, O.Weichenrieder. The Structural Basis For the Interaction Between the CAF1 Nuclease and the NOT1 Scaffold of the Human CCR4-Not Deadenylase Complex Nucleic Acids Res. V. 40 11058 2012.
ISSN: ISSN 0305-1048
PubMed: 22977175
DOI: 10.1093/NAR/GKS883