Chlorine in PDB 4gov: The Crystal Structure of Human Fascin 1 S39D Mutant
Protein crystallography data
The structure of The Crystal Structure of Human Fascin 1 S39D Mutant, PDB code: 4gov
was solved by
S.Y.Yang,
F.K.Huang,
J.Huang,
S.Chen,
J.Jakoncic,
A.Leo-Macias,
R.Diaz-Avalos,
L.Chen,
J.J.Zhang,
X.Y.Huang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.20
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
161.250,
70.723,
111.058,
90.00,
130.68,
90.00
|
R / Rfree (%)
|
19.6 /
23.4
|
Other elements in 4gov:
The structure of The Crystal Structure of Human Fascin 1 S39D Mutant also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Chlorine atom in the The Crystal Structure of Human Fascin 1 S39D Mutant
(pdb code 4gov). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the
The Crystal Structure of Human Fascin 1 S39D Mutant, PDB code: 4gov:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 13 in 4gov
Go back to
Chlorine Binding Sites List in 4gov
Chlorine binding site 1 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl503
b:57.5
occ:1.00
|
NH2
|
A:ARG118
|
3.0
|
56.7
|
1.0
|
OG1
|
A:THR115
|
3.9
|
50.9
|
1.0
|
CG
|
A:GLU116
|
3.9
|
55.5
|
1.0
|
CZ
|
A:ARG118
|
4.2
|
58.0
|
1.0
|
NH1
|
A:ARG118
|
4.7
|
58.6
|
1.0
|
CB
|
A:THR115
|
4.7
|
49.4
|
1.0
|
CD
|
A:GLU116
|
4.8
|
58.8
|
1.0
|
OE2
|
A:GLU116
|
4.9
|
58.1
|
1.0
|
CB
|
A:GLU116
|
4.9
|
53.6
|
1.0
|
O
|
A:HOH826
|
4.9
|
76.3
|
1.0
|
|
Chlorine binding site 2 out
of 13 in 4gov
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Chlorine Binding Sites List in 4gov
Chlorine binding site 2 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl504
b:67.3
occ:1.00
|
CD
|
A:ARG82
|
3.4
|
65.9
|
1.0
|
N
|
A:GLU83
|
3.5
|
63.3
|
1.0
|
N
|
A:VAL84
|
3.8
|
62.8
|
1.0
|
NE
|
A:ARG82
|
3.9
|
69.4
|
1.0
|
NH1
|
A:ARG82
|
3.9
|
71.9
|
1.0
|
CA
|
A:ARG82
|
3.9
|
60.4
|
1.0
|
CZ
|
A:ARG82
|
4.1
|
72.1
|
1.0
|
CG
|
A:ARG82
|
4.2
|
63.0
|
1.0
|
C
|
A:ARG82
|
4.2
|
60.5
|
1.0
|
O
|
A:VAL84
|
4.3
|
61.7
|
1.0
|
CB
|
A:ARG82
|
4.3
|
60.6
|
1.0
|
CA
|
A:GLU83
|
4.4
|
64.8
|
1.0
|
CB
|
A:GLU83
|
4.4
|
69.1
|
1.0
|
CB
|
A:VAL84
|
4.6
|
65.9
|
1.0
|
CG
|
A:GLU83
|
4.6
|
72.2
|
1.0
|
C
|
A:GLU83
|
4.6
|
63.1
|
1.0
|
CA
|
A:VAL84
|
4.7
|
62.5
|
1.0
|
OE1
|
A:GLU83
|
4.7
|
78.6
|
1.0
|
C
|
A:VAL84
|
5.0
|
61.1
|
1.0
|
|
Chlorine binding site 3 out
of 13 in 4gov
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Chlorine Binding Sites List in 4gov
Chlorine binding site 3 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl505
b:67.0
occ:1.00
|
O
|
A:HOH808
|
3.2
|
43.3
|
1.0
|
O
|
A:HOH709
|
3.4
|
42.3
|
1.0
|
CB
|
A:ALA129
|
4.1
|
39.0
|
1.0
|
|
Chlorine binding site 4 out
of 13 in 4gov
Go back to
Chlorine Binding Sites List in 4gov
Chlorine binding site 4 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl506
b:36.9
occ:1.00
|
NH1
|
A:ARG167
|
3.3
|
46.6
|
1.0
|
O
|
A:HOH836
|
3.3
|
56.6
|
1.0
|
N
|
A:ASP168
|
3.5
|
44.1
|
1.0
|
N
|
A:VAL169
|
3.6
|
42.5
|
1.0
|
CG2
|
A:VAL169
|
3.7
|
44.6
|
1.0
|
CG
|
A:ARG167
|
3.9
|
44.8
|
1.0
|
O
|
A:VAL169
|
3.9
|
39.9
|
1.0
|
CB
|
A:ASP168
|
4.1
|
46.0
|
1.0
|
CA
|
A:ASP168
|
4.1
|
44.5
|
1.0
|
C
|
A:ASP168
|
4.3
|
43.8
|
1.0
|
C
|
A:ARG167
|
4.4
|
44.6
|
1.0
|
CA
|
A:ARG167
|
4.4
|
44.6
|
1.0
|
CD
|
A:ARG167
|
4.4
|
44.7
|
1.0
|
CZ
|
A:ARG167
|
4.4
|
46.6
|
1.0
|
CB
|
A:ARG167
|
4.5
|
44.5
|
1.0
|
O
|
A:HOH880
|
4.5
|
64.2
|
1.0
|
CA
|
A:VAL169
|
4.5
|
42.5
|
1.0
|
OD2
|
A:ASP168
|
4.6
|
48.6
|
1.0
|
C
|
A:VAL169
|
4.7
|
40.6
|
1.0
|
CB
|
A:VAL169
|
4.7
|
44.2
|
1.0
|
NE
|
A:ARG167
|
4.8
|
45.1
|
1.0
|
CG
|
A:ASP168
|
4.9
|
47.2
|
1.0
|
OD2
|
A:ASP290
|
5.0
|
50.9
|
1.0
|
|
Chlorine binding site 5 out
of 13 in 4gov
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Chlorine Binding Sites List in 4gov
Chlorine binding site 5 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl507
b:54.1
occ:1.00
|
O
|
A:HOH633
|
2.9
|
50.9
|
1.0
|
O
|
A:HOH628
|
3.1
|
44.5
|
1.0
|
NH2
|
A:ARG90
|
3.2
|
61.7
|
1.0
|
C
|
A:PRO52
|
3.4
|
69.3
|
1.0
|
CD
|
A:PRO52
|
3.5
|
68.7
|
1.0
|
O
|
A:PRO52
|
3.6
|
72.9
|
1.0
|
NE
|
A:ARG90
|
3.7
|
57.8
|
1.0
|
N
|
A:PRO52
|
3.7
|
67.4
|
1.0
|
CB
|
A:PRO51
|
3.9
|
60.5
|
1.0
|
CZ
|
A:ARG90
|
3.9
|
58.1
|
1.0
|
CA
|
A:PRO52
|
4.2
|
67.9
|
1.0
|
CB
|
A:PRO85
|
4.2
|
58.3
|
1.0
|
O
|
A:PRO85
|
4.4
|
62.4
|
1.0
|
CG
|
A:PRO52
|
4.4
|
71.0
|
1.0
|
C
|
A:PRO85
|
4.5
|
59.3
|
1.0
|
C
|
A:PRO51
|
4.6
|
63.5
|
1.0
|
CA
|
A:PRO51
|
4.6
|
60.8
|
1.0
|
N
|
A:GLY86
|
4.9
|
57.6
|
1.0
|
CB
|
A:PRO52
|
4.9
|
69.7
|
1.0
|
CD
|
A:ARG90
|
4.9
|
52.8
|
1.0
|
CG
|
A:PRO51
|
4.9
|
59.4
|
1.0
|
CA
|
A:GLY86
|
5.0
|
53.8
|
1.0
|
|
Chlorine binding site 6 out
of 13 in 4gov
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Chlorine Binding Sites List in 4gov
Chlorine binding site 6 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl505
b:57.7
occ:1.00
|
N
|
B:ASP420
|
3.2
|
54.6
|
1.0
|
O
|
B:HOH758
|
3.6
|
57.8
|
1.0
|
CA
|
B:ASP420
|
3.7
|
56.4
|
1.0
|
O
|
B:HOH756
|
3.8
|
53.9
|
1.0
|
CE2
|
B:PHE418
|
3.9
|
44.2
|
1.0
|
CD2
|
B:PHE418
|
4.0
|
44.0
|
1.0
|
C
|
B:ASN419
|
4.3
|
48.2
|
1.0
|
CA
|
B:ASN419
|
4.5
|
48.7
|
1.0
|
CB
|
B:ASP420
|
4.5
|
59.4
|
1.0
|
O
|
B:PHE418
|
4.6
|
47.7
|
1.0
|
C
|
B:ASP420
|
4.9
|
53.2
|
1.0
|
|
Chlorine binding site 7 out
of 13 in 4gov
Go back to
Chlorine Binding Sites List in 4gov
Chlorine binding site 7 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl506
b:65.3
occ:1.00
|
NZ
|
B:LYS131
|
2.9
|
52.3
|
1.0
|
CD
|
B:LYS131
|
3.6
|
49.4
|
1.0
|
N
|
B:PRO128
|
3.7
|
48.6
|
1.0
|
O
|
B:HOH784
|
3.7
|
54.1
|
1.0
|
CE
|
B:LYS131
|
3.8
|
50.1
|
1.0
|
CD
|
B:PRO128
|
3.8
|
51.3
|
1.0
|
C
|
B:SER127
|
3.9
|
47.2
|
1.0
|
CG
|
B:PRO128
|
3.9
|
51.6
|
1.0
|
CA
|
B:PRO128
|
4.1
|
47.2
|
1.0
|
CA
|
B:SER127
|
4.2
|
48.3
|
1.0
|
O
|
B:SER127
|
4.4
|
45.6
|
1.0
|
O
|
B:VAL126
|
4.5
|
48.9
|
1.0
|
CB
|
B:PRO128
|
4.6
|
50.1
|
1.0
|
O
|
B:HOH649
|
4.7
|
61.0
|
1.0
|
CG
|
B:LYS131
|
4.9
|
47.0
|
1.0
|
N
|
B:SER127
|
5.0
|
46.6
|
1.0
|
C
|
B:VAL126
|
5.0
|
47.1
|
1.0
|
CG1
|
B:VAL126
|
5.0
|
44.2
|
1.0
|
|
Chlorine binding site 8 out
of 13 in 4gov
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Chlorine Binding Sites List in 4gov
Chlorine binding site 8 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl507
b:37.9
occ:1.00
|
O
|
B:HOH859
|
3.4
|
64.2
|
1.0
|
NH2
|
B:ARG167
|
3.5
|
46.1
|
1.0
|
N
|
B:ASP168
|
3.5
|
47.6
|
1.0
|
CG
|
B:ARG167
|
3.7
|
46.0
|
1.0
|
N
|
B:VAL169
|
3.9
|
46.6
|
1.0
|
CB
|
B:ASP168
|
4.0
|
50.8
|
1.0
|
O
|
B:VAL169
|
4.1
|
45.0
|
1.0
|
CG2
|
B:VAL169
|
4.1
|
47.6
|
1.0
|
CA
|
B:ARG167
|
4.1
|
46.7
|
1.0
|
CB
|
B:ARG167
|
4.2
|
45.8
|
1.0
|
CA
|
B:ASP168
|
4.2
|
48.5
|
1.0
|
C
|
B:ARG167
|
4.2
|
46.8
|
1.0
|
CD
|
B:ARG167
|
4.2
|
45.3
|
1.0
|
OD2
|
B:ASP168
|
4.4
|
55.4
|
1.0
|
CG
|
B:ASP168
|
4.4
|
53.3
|
1.0
|
CZ
|
B:ARG167
|
4.5
|
46.1
|
1.0
|
C
|
B:ASP168
|
4.6
|
46.8
|
1.0
|
O
|
B:HOH642
|
4.7
|
66.7
|
1.0
|
O
|
B:HOH765
|
4.7
|
70.7
|
1.0
|
OD2
|
B:ASP290
|
4.7
|
54.9
|
1.0
|
NE
|
B:ARG167
|
4.8
|
45.7
|
1.0
|
CA
|
B:VAL169
|
4.8
|
45.5
|
1.0
|
C
|
B:VAL169
|
4.9
|
44.6
|
1.0
|
|
Chlorine binding site 9 out
of 13 in 4gov
Go back to
Chlorine Binding Sites List in 4gov
Chlorine binding site 9 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl508
b:62.4
occ:1.00
|
N
|
B:PHE418
|
3.2
|
43.4
|
1.0
|
CA
|
B:GLU417
|
3.8
|
43.5
|
1.0
|
O2
|
B:GOL514
|
3.9
|
43.8
|
1.0
|
CB
|
B:PHE418
|
3.9
|
43.1
|
1.0
|
C
|
B:GLU417
|
4.0
|
43.5
|
1.0
|
CA
|
B:PHE418
|
4.1
|
44.1
|
1.0
|
O
|
B:PHE418
|
4.2
|
47.7
|
1.0
|
O3
|
B:GOL514
|
4.2
|
42.3
|
1.0
|
CB
|
B:GLU417
|
4.2
|
45.2
|
1.0
|
O
|
B:HOH621
|
4.2
|
64.8
|
1.0
|
C
|
B:PHE418
|
4.6
|
46.1
|
1.0
|
O
|
B:LEU416
|
4.6
|
42.8
|
1.0
|
CG
|
B:GLU417
|
4.7
|
46.7
|
1.0
|
C3
|
B:GOL514
|
4.8
|
41.4
|
1.0
|
O
|
B:HOH798
|
4.8
|
54.7
|
1.0
|
O
|
B:HOH756
|
5.0
|
53.9
|
1.0
|
C2
|
B:GOL514
|
5.0
|
41.6
|
1.0
|
N
|
B:GLU417
|
5.0
|
42.2
|
1.0
|
CE
|
B:LYS379
|
5.0
|
46.7
|
1.0
|
|
Chlorine binding site 10 out
of 13 in 4gov
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Chlorine Binding Sites List in 4gov
Chlorine binding site 10 out
of 13 in the The Crystal Structure of Human Fascin 1 S39D Mutant
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of The Crystal Structure of Human Fascin 1 S39D Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl509
b:56.6
occ:1.00
|
O
|
B:HOH648
|
3.1
|
45.7
|
1.0
|
NH1
|
B:ARG185
|
3.1
|
50.5
|
1.0
|
NE2
|
B:GLN182
|
3.3
|
42.1
|
1.0
|
O
|
B:HOH647
|
3.5
|
55.4
|
1.0
|
O
|
B:GLN182
|
3.7
|
45.0
|
1.0
|
CG
|
B:GLN182
|
3.9
|
42.0
|
1.0
|
CD
|
B:ARG185
|
4.0
|
44.6
|
1.0
|
CD
|
B:GLN182
|
4.1
|
41.8
|
1.0
|
CB
|
B:ASP183
|
4.2
|
50.7
|
1.0
|
CG
|
B:ARG185
|
4.2
|
43.5
|
1.0
|
CB
|
B:ARG185
|
4.3
|
41.6
|
1.0
|
CZ
|
B:ARG185
|
4.3
|
49.2
|
1.0
|
CA
|
B:PRO208
|
4.3
|
44.2
|
1.0
|
C
|
B:GLN182
|
4.6
|
43.4
|
1.0
|
NE
|
B:ARG185
|
4.6
|
47.4
|
1.0
|
N
|
B:ARG185
|
4.8
|
43.2
|
1.0
|
O
|
B:GLU207
|
4.8
|
43.8
|
1.0
|
CB
|
B:GLN182
|
4.8
|
40.3
|
1.0
|
O
|
B:HOH656
|
4.9
|
52.7
|
1.0
|
O
|
B:HOH747
|
4.9
|
73.1
|
1.0
|
CA
|
B:GLY211
|
4.9
|
38.5
|
1.0
|
N
|
B:PRO208
|
4.9
|
45.1
|
1.0
|
CB
|
B:PRO208
|
4.9
|
45.2
|
1.0
|
O
|
B:PRO208
|
5.0
|
41.6
|
1.0
|
|
Reference:
S.Yang,
F.K.Huang,
J.Huang,
S.Chen,
J.Jakoncic,
A.Leo-Macias,
R.Diaz-Avalos,
L.Chen,
J.J.Zhang,
X.Y.Huang.
Molecular Mechanism of Fascin Function in Filopodial Formation. J.Biol.Chem. V. 288 274 2013.
ISSN: ISSN 0021-9258
PubMed: 23184945
DOI: 10.1074/JBC.M112.427971
Page generated: Sun Jul 21 14:50:22 2024
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