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Chlorine in PDB 4gri: Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc

Enzymatic activity of Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc

All present enzymatic activity of Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc:
6.1.1.17;

Protein crystallography data

The structure of Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc, PDB code: 4gri was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.17 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.460, 110.310, 197.880, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 28.5

Other elements in 4gri:

The structure of Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc (pdb code 4gri). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc, PDB code: 4gri:

Chlorine binding site 1 out of 1 in 4gri

Go back to Chlorine Binding Sites List in 4gri
Chlorine binding site 1 out of 1 in the Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound to Glutamic Acid and Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:50.6
occ:1.00
 CA A:GLY72 3.5 21.5 1.0
O A:HOH646 3.7 46.8 1.0
N A:VAL74 3.7 26.7 1.0
CD A:PRO73 3.8 34.3 1.0
CB A:VAL74 3.8 14.4 1.0
CG2 A:VAL75 3.8 22.9 1.0
C A:GLY72 3.8 22.5 1.0
N A:VAL75 3.9 20.4 1.0
N A:PRO73 3.9 40.2 1.0
N A:GLY72 4.1 34.9 1.0
O A:GLU71 4.1 33.5 1.0
CB A:PHE69 4.2 13.6 1.0
CA A:VAL74 4.2 23.0 1.0
CG2 A:VAL74 4.3 12.1 1.0
C A:GLU71 4.3 37.8 1.0
CB A:LEU40 4.3 8.0 1.0
CD2 A:LEU40 4.4 4.4 1.0
CD2 A:PHE69 4.4 9.0 1.0
CG1 A:VAL75 4.5 41.6 1.0
CG A:PHE69 4.5 17.2 1.0
CG A:PRO73 4.6 17.4 1.0
C A:VAL74 4.6 28.4 1.0
CB A:VAL75 4.6 26.9 1.0
O A:GLY72 4.6 38.6 1.0
C A:PRO73 4.8 26.5 1.0
CA A:VAL75 4.8 19.2 1.0
CA A:PRO73 4.9 33.8 1.0
CG1 A:VAL74 4.9 15.9 1.0
CG A:LEU40 5.0 20.1 1.0

Reference:

S.O.Moen, T.E.Edwards, D.M.Dranow, M.C.Clifton, B.Sankaran, W.C.Van Voorhis, A.Sharma, C.Manoil, B.L.Staker, P.J.Myler, D.D.Lorimer. Ligand Co-Crystallization of Aminoacyl-Trna Synthetases From Infectious Disease Organisms. Sci Rep V. 7 223 2017.
ISSN: ESSN 2045-2322
PubMed: 28303005
DOI: 10.1038/S41598-017-00367-6
Page generated: Sun Jul 21 14:58:41 2024

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