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Chlorine in PDB 4grn: Crystal Structure of Paam Mutant of Human Mif

Enzymatic activity of Crystal Structure of Paam Mutant of Human Mif

All present enzymatic activity of Crystal Structure of Paam Mutant of Human Mif:
5.3.2.1; 5.3.3.12;

Protein crystallography data

The structure of Crystal Structure of Paam Mutant of Human Mif, PDB code: 4grn was solved by C.Fan, E.Lolis, D.Rajesekaran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.36 / 1.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.517, 95.517, 103.907, 90.00, 90.00, 120.00
R / Rfree (%) 12.8 / 14.1

Other elements in 4grn:

The structure of Crystal Structure of Paam Mutant of Human Mif also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Paam Mutant of Human Mif (pdb code 4grn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of Paam Mutant of Human Mif, PDB code: 4grn:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 4grn

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Chlorine binding site 1 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:30.0
occ:1.00
 O A:HOH374 2.8 31.1 1.0
O A:HOH378 2.9 30.5 1.0
O A:HOH411 3.0 28.1 1.0
ND2 A:ASN10 3.2 12.6 1.0
O A:SER55 3.3 12.6 1.0
CB A:ASN10 3.6 10.2 1.0
O A:HOH347 3.9 21.6 1.0
CG A:ASN10 3.9 10.5 1.0
O A:HOH351 3.9 23.2 1.0
CB A:SER55 4.1 16.1 1.0
C A:SER55 4.4 11.8 1.0
OG A:SER55 4.6 18.8 1.0
O A:MET49 4.6 12.3 1.0
O A:GLN47 4.7 10.4 1.0
CA A:SER55 4.7 12.5 1.0
O A:ASN10 4.7 13.1 1.0
O A:HOH322 4.8 22.2 1.0
CA A:ASN10 4.9 9.8 1.0

Chlorine binding site 2 out of 12 in 4grn

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Chlorine binding site 2 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:24.5
occ:1.00
 O B:HOH393 3.1 32.2 1.0
O A:HOH415 3.1 38.2 1.0
O B:HOH441 3.2 40.6 1.0
ND2 B:ASN112 3.3 16.7 1.0
CG A:PRO93 3.4 19.4 1.0
O B:HOH329 3.6 20.2 1.0
CB A:ALA86 3.7 13.5 1.0
CA A:GLY83 3.9 12.6 1.0
OD1 B:ASN112 4.1 16.4 1.0
CG B:ASN112 4.2 14.8 1.0
O A:CYS82 4.3 12.7 1.0
CD A:PRO93 4.4 13.6 1.0
N A:GLY83 4.4 12.0 1.0
CB A:PRO93 4.4 13.9 1.0
O B:HOH435 4.5 41.2 1.0
C A:CYS82 4.5 11.5 1.0
O B:HOH370 4.8 32.0 1.0
O A:GLY83 4.8 13.5 1.0
O A:HOH389 4.9 35.1 1.0
C A:GLY83 4.9 12.3 1.0

Chlorine binding site 3 out of 12 in 4grn

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Chlorine binding site 3 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:16.1
occ:1.00
 O C:HOH304 3.0 16.8 1.0
O A:HOH470 3.0 50.1 1.0
N A:ASN104 3.1 11.2 1.0
ND2 A:ASN107 3.2 15.2 1.0
CG A:ASN104 3.8 19.2 1.0
CB A:ASN104 3.8 14.1 1.0
CA A:MET103 3.8 10.7 1.0
ND2 A:ASN104 3.9 20.4 0.7
CB A:ASN107 4.0 12.1 1.0
C A:MET103 4.0 10.8 1.0
O A:HOH359 4.0 22.8 1.0
CG A:ASN107 4.1 12.8 1.0
CE A:MET103 4.1 16.7 1.0
CA A:ASN104 4.1 12.0 1.0
O A:HOH366 4.1 27.0 1.0
O A:ASP102 4.1 11.8 1.0
OD1 A:ASN104 4.2 24.0 1.0
O A:HOH372 4.3 37.3 1.0
SD A:MET103 4.3 15.2 1.0
CB A:MET103 4.6 10.7 1.0
O A:ASN104 4.7 11.4 1.0
O C:HOH314 4.7 21.9 1.0
O A:HOH459 4.7 40.2 1.0
N A:MET103 4.8 10.5 1.0
C A:ASN104 4.9 11.3 1.0
C A:ASP102 4.9 10.4 1.0
O C:TYR100 4.9 11.8 1.0

Chlorine binding site 4 out of 12 in 4grn

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Chlorine binding site 4 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:16.4
occ:1.00
 O A:HOH358 3.1 23.2 1.0
ND2 A:ASN111 3.3 13.0 1.0
O A:HOH356 4.2 23.3 1.0
CG A:ASN111 4.3 12.2 1.0
O A:HOH414 4.3 33.0 1.0
O A:HOH477 4.4 46.2 1.0
OD1 A:ASN111 4.4 14.1 1.0

Chlorine binding site 5 out of 12 in 4grn

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Chlorine binding site 5 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:29.9
occ:1.00
 O C:HOH325 2.8 18.8 1.0
O C:HOH361 3.0 32.7 1.0
NH1 C:ARG95 3.1 12.0 1.0
NE2 A:GLN37 3.2 24.7 1.0
CG C:ARG95 3.5 11.5 1.0
CD C:ARG95 3.5 11.8 1.0
O C:HOH336 4.1 23.4 1.0
CZ C:ARG95 4.1 10.8 1.0
NE C:ARG95 4.3 11.2 1.0
CD A:GLN37 4.5 22.1 1.0
OD2 C:ASP94 4.5 17.9 1.0
O C:HOH357 4.7 28.7 1.0
O C:ASP94 4.8 11.9 1.0
CD1 C:PHE51 4.9 13.6 1.0
O C:HOH384 4.9 42.7 1.0
CG C:ASP94 4.9 15.4 1.0
O C:HOH437 5.0 46.7 1.0
O C:PHE51 5.0 11.3 1.0
OE1 A:GLN37 5.0 22.8 1.0
OD1 C:ASP94 5.0 17.4 1.0
CB C:ARG95 5.0 11.5 1.0

Chlorine binding site 6 out of 12 in 4grn

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Chlorine binding site 6 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:16.5
occ:1.00
 O B:HOH427 2.9 26.9 1.0
O A:HOH327 3.1 16.9 1.0
NH1 A:ARG95 3.2 10.1 1.0
NE2 B:GLN37 3.2 15.4 1.0
O A:HOH440 3.2 16.1 1.0
CG A:ARG95 3.6 10.3 1.0
CD A:ARG95 3.8 10.4 1.0
CD B:GLN37 4.2 13.5 1.0
CZ A:ARG95 4.3 8.9 1.0
CD1 A:PHE51 4.4 11.1 1.0
O A:HOH354 4.5 28.0 1.0
NE A:ARG95 4.5 9.3 1.0
OE1 B:GLN37 4.5 15.1 1.0
O A:ASP94 4.6 10.0 1.0
CE1 A:PHE51 4.6 12.2 1.0
O B:HOH359 4.6 23.4 1.0
OD1 A:ASP94 4.7 15.1 1.0
O A:PHE51 4.7 9.8 1.0
CB A:ARG95 5.0 9.6 1.0

Chlorine binding site 7 out of 12 in 4grn

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Chlorine binding site 7 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:21.3
occ:1.00
 NZ A:LYS68 3.1 21.6 1.0
NZ A:LYS34 3.2 15.6 1.0
O A:HOH397 3.3 32.5 1.0
CE A:LYS68 3.7 20.5 1.0
CG A:LYS34 3.7 12.9 1.0
CE A:LYS34 3.9 13.4 1.0
CG A:LYS68 4.0 13.3 1.0
O A:ILE66 4.3 11.2 1.0
CD A:LYS34 4.4 12.6 1.0
CD A:LYS68 4.5 16.5 1.0
CA A:PRO1 4.6 22.2 1.0
O A:HOH461 4.7 44.9 1.0
CB A:LYS34 4.9 12.5 1.0
O A:THR32 4.9 14.5 1.0

Chlorine binding site 8 out of 12 in 4grn

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Chlorine binding site 8 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:12.9
occ:1.00
 O A:HOH307 3.1 15.5 1.0
ND2 B:ASN107 3.2 14.0 1.0
N B:ASN104 3.2 10.1 1.0
O B:HOH462 3.3 42.9 1.0
CA B:MET103 3.8 10.3 1.0
O B:HOH376 3.8 26.2 1.0
CB B:ASN104 3.8 13.6 1.0
CB B:ASN107 3.9 10.0 1.0
CG B:ASN104 3.9 19.2 1.0
CE B:MET103 4.0 15.3 1.0
C B:MET103 4.0 10.6 1.0
CG B:ASN107 4.0 11.4 1.0
ND2 B:ASN104 4.0 19.9 0.6
O B:ASP102 4.1 12.1 1.0
CA B:ASN104 4.1 10.6 1.0
SD B:MET103 4.3 13.8 1.0
OD1 B:ASN104 4.4 23.4 1.0
O B:HOH432 4.4 39.7 1.0
O A:HOH424 4.4 31.5 1.0
O B:HOH405 4.4 32.4 1.0
O B:HOH397 4.6 24.1 1.0
CB B:MET103 4.6 11.2 1.0
O B:ASN104 4.6 10.3 1.0
O B:HOH463 4.8 46.2 1.0
N B:MET103 4.8 10.4 1.0
O B:HOH442 4.9 37.7 1.0
C B:ASP102 4.9 10.6 1.0
O A:HOH325 4.9 20.8 1.0
C B:ASN104 4.9 9.4 1.0
O A:TYR100 5.0 9.9 1.0

Chlorine binding site 9 out of 12 in 4grn

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Chlorine binding site 9 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:29.2
occ:1.00
 NH1 B:ARG88 3.2 13.0 1.0
O B:HOH446 3.5 41.5 1.0
CD B:ARG88 3.6 12.6 1.0
O B:HOH407 3.7 27.9 1.0
O B:GLU87 4.1 15.4 1.0
CZ B:ARG88 4.1 12.3 1.0
NE B:ARG88 4.3 12.3 1.0
CA B:ARG88 4.4 10.7 1.0
CG B:GLU87 4.6 15.2 1.0
C B:GLU87 4.7 12.0 1.0
O B:HOH353 4.8 23.7 1.0
CG B:ARG88 4.8 11.5 1.0
O B:HOH383 4.9 37.2 1.0
N B:ARG88 5.0 10.2 1.0

Chlorine binding site 10 out of 12 in 4grn

Go back to Chlorine Binding Sites List in 4grn
Chlorine binding site 10 out of 12 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:30.5
occ:1.00
 NE2 C:GLN73 3.3 21.6 1.0
N C:GLN73 3.4 17.2 1.0
N C:ALA72 3.5 18.9 1.0
C C:GLY70 3.5 15.8 1.0
CA C:GLY70 3.6 16.5 1.0
CG C:GLN73 3.6 18.8 1.0
N C:GLY71 3.6 17.8 1.0
CD C:GLN73 3.9 20.6 1.0
CB C:GLN73 3.9 17.4 1.0
CB C:ALA72 4.0 22.3 1.0
O C:GLY70 4.0 15.6 1.0
CA C:ALA72 4.1 19.9 1.0
C C:ALA72 4.2 17.4 1.0
N C:GLY70 4.3 15.6 1.0
CA C:GLN73 4.3 16.3 1.0
C C:GLY71 4.3 17.2 1.0
O C:HOH369 4.3 41.1 1.0
CA C:GLY71 4.4 19.0 1.0
C C:ILE69 4.9 15.3 1.0
O C:ILE69 4.9 17.3 1.0

Reference:

C.Fan, E.Lolis, D.Rajesekaran. Crystallographic and Biological Chacerterization of N- and C-Terminus of Mif To Be Published.
Page generated: Sun Jul 21 14:59:09 2024

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