Atomistry » Chlorine » PDB 4gt9-4h1p » 4gvd
Atomistry »
  Chlorine »
    PDB 4gt9-4h1p »
      4gvd »

Chlorine in PDB 4gvd: Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide

Protein crystallography data

The structure of Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide, PDB code: 4gvd was solved by X.Liu, T.R.Shepherd, A.M.Murray, Z.Xu, E.J.Fuentes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.95 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 26.517, 58.106, 50.948, 90.00, 90.50, 90.00
R / Rfree (%) 19.6 / 24.3

Other elements in 4gvd:

The structure of Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide (pdb code 4gvd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide, PDB code: 4gvd:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4gvd

Go back to Chlorine Binding Sites List in 4gvd
Chlorine binding site 1 out of 3 in the Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:60.6
occ:1.00
O A:VAL878 3.3 31.9 1.0
CB A:SER877 4.0 35.5 1.0
C A:VAL878 4.1 30.6 1.0
N A:VAL878 4.3 33.0 1.0
OG A:SER877 4.4 37.9 1.0
CA A:LYS879 4.7 35.5 1.0
N A:LYS879 4.7 29.4 1.0
CA A:SER877 4.9 32.7 1.0
CA A:VAL878 4.9 30.9 1.0
N A:GLU880 5.0 40.0 1.0
C A:SER877 5.0 32.5 1.0

Chlorine binding site 2 out of 3 in 4gvd

Go back to Chlorine Binding Sites List in 4gvd
Chlorine binding site 2 out of 3 in the Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:65.3
occ:1.00
NA A:NA1002 2.5 45.8 1.0
O A:HOH1119 3.9 25.6 1.0
CG A:MET839 4.2 33.1 1.0
SD A:MET839 4.7 39.8 1.0

Chlorine binding site 3 out of 3 in 4gvd

Go back to Chlorine Binding Sites List in 4gvd
Chlorine binding site 3 out of 3 in the Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1002

b:35.3
occ:1.00
NA B:NA1001 2.6 40.9 1.0
N B:VAL878 2.9 18.6 1.0
O B:VAL878 3.3 19.1 1.0
CA B:SER877 3.5 17.4 1.0
CB B:SER877 3.7 17.9 1.0
C B:SER877 3.7 17.9 1.0
C B:VAL878 3.9 20.8 1.0
CA B:VAL878 4.0 17.6 1.0
CB B:ALA891 4.0 23.1 1.0
O B:HOH1136 4.3 36.9 1.0
CB B:VAL878 4.5 17.4 1.0
O B:HOH1156 4.7 30.0 1.0
N B:SER877 4.8 16.5 1.0
OG B:SER877 4.8 22.5 1.0
O B:ASN876 4.9 22.4 1.0
O B:SER877 4.9 16.3 1.0

Reference:

X.Liu, T.R.Shepherd, A.M.Murray, Z.Xu, E.J.Fuentes. The Structure of the TIAM1 Pdz Domain/ Phospho-SYNDECAN1 Complex Reveals A Ligand Conformation That Modulates Protein Dynamics. Structure V. 21 342 2013.
ISSN: ISSN 0969-2126
PubMed: 23395182
DOI: 10.1016/J.STR.2013.01.004
Page generated: Sat Dec 12 10:40:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy