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Chlorine in PDB 4gxh: Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004

Enzymatic activity of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004

All present enzymatic activity of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004:
3.4.19.3;

Protein crystallography data

The structure of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004, PDB code: 4gxh was solved by A.Ghosh, S.C.Almo, New York Structural Genomics Research Consortium(Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.69 / 2.70
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 117.179, 117.179, 186.615, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 (pdb code 4gxh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004, PDB code: 4gxh:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 1 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:71.5
occ:1.00
 N A:GLN70 2.9 35.4 1.0
CZ A:PHE12 3.1 54.4 0.6
ND2 A:ASN18 3.1 59.6 1.0
OD1 A:ASN18 3.6 51.4 1.0
CE1 A:PHE12 3.6 53.9 0.6
CB A:GLN70 3.6 44.6 1.0
CA A:GLY69 3.6 39.0 1.0
C A:GLY69 3.7 36.9 1.0
CD2 A:PHE9 3.8 43.7 1.0
CG A:ASN18 3.8 54.3 1.0
CA A:GLN70 3.8 35.1 1.0
CE2 A:PHE12 4.0 52.1 0.6
CB A:PHE9 4.1 51.0 1.0
OG A:SER20 4.1 55.6 1.0
SG A:CYS143 4.2 43.1 1.0
O A:GLN70 4.2 32.2 1.0
CG A:PHE9 4.3 45.8 1.0
C A:GLN70 4.5 34.9 1.0
CG A:GLN70 4.6 56.6 1.0
CE2 A:PHE9 4.6 42.2 1.0
CD1 A:PHE12 4.8 59.5 0.6
O A:GLY69 4.9 39.8 1.0
CB A:SER20 4.9 48.9 1.0
NE2 A:GLN70 4.9 60.3 1.0

Chlorine binding site 2 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 2 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:54.7
occ:1.00
 ND2 B:ASN18 3.0 59.3 1.0
N B:GLN70 3.1 29.8 1.0
OD1 B:ASN18 3.7 55.2 1.0
CB B:GLN70 3.7 24.6 1.0
CD2 B:PHE9 3.8 33.3 1.0
CG B:ASN18 3.8 59.3 1.0
CA B:GLY69 3.9 34.9 1.0
C B:GLY69 3.9 31.2 1.0
CA B:GLN70 4.0 23.6 1.0
CB B:PHE9 4.1 36.5 1.0
OG B:SER20 4.1 37.5 1.0
SG B:CYS143 4.2 42.3 1.0
CG B:PHE9 4.2 39.4 1.0
O B:GLN70 4.4 29.2 1.0
CE2 B:PHE9 4.6 33.0 1.0
C B:GLN70 4.7 31.7 1.0
CB B:SER20 4.9 34.8 1.0
CG B:GLN70 5.0 44.9 1.0

Chlorine binding site 3 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 3 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:60.0
occ:1.00
 N C:GLN70 2.9 31.9 1.0
ND2 C:ASN18 3.3 40.3 1.0
CB C:GLN70 3.5 29.7 1.0
OD1 C:ASN18 3.6 40.7 1.0
CA C:GLY69 3.7 30.3 1.0
CD1 C:PHE9 3.8 41.6 1.0
CA C:GLN70 3.8 31.7 1.0
C C:GLY69 3.8 32.6 1.0
OG C:SER20 3.8 43.0 1.0
CG C:ASN18 3.9 44.1 1.0
CB C:PHE9 4.0 41.2 1.0
SG C:CYS143 4.1 50.0 1.0
CG C:PHE9 4.2 41.9 1.0
O C:GLN70 4.2 30.6 1.0
C C:GLN70 4.5 29.7 1.0
CE1 C:PHE9 4.6 44.6 1.0
CB C:SER20 4.7 38.8 1.0
CG C:GLN70 4.8 52.7 1.0
O C:GLY69 5.0 35.2 1.0

Chlorine binding site 4 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 4 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl303

b:57.5
occ:1.00
 ND2 D:ASN18 2.9 45.0 1.0
N D:GLN70 3.1 26.6 1.0
CB D:GLN70 3.6 34.5 1.0
OD1 D:ASN18 3.7 47.5 1.0
CG D:ASN18 3.8 46.8 1.0
CD2 D:PHE9 3.8 42.2 1.0
CA D:GLY69 3.9 26.1 1.0
CA D:GLN70 3.9 29.8 1.0
C D:GLY69 3.9 28.3 1.0
OG D:SER20 4.0 47.6 1.0
CB D:PHE9 4.1 38.6 1.0
SG D:CYS143 4.2 50.1 1.0
CG D:PHE9 4.2 41.1 1.0
O D:GLN70 4.4 32.2 1.0
CE2 D:PHE9 4.6 41.1 1.0
C D:GLN70 4.6 30.5 1.0
CB D:SER20 4.9 40.0 1.0
NE2 D:GLN70 4.9 48.8 1.0
CG D:GLN70 5.0 42.4 1.0

Reference:

A.Ghosh, R.Bhoshle, R.Toro, A.Gizzi, B.Hillerich, R.Seidel, S.C.Almo, New York Structural Genomics Research Consortium. Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 (Casp Target) To Be Published.
Page generated: Sat Dec 12 10:41:00 2020

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