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Chlorine in PDB 4h1p: Use of Europium For Sad Phasing at the Cu K Alpha Wavelength

Enzymatic activity of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength

All present enzymatic activity of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength:
3.2.1.17;

Protein crystallography data

The structure of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength, PDB code: 4h1p was solved by B.Vijayakumar, D.Velmurugan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.75 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.485, 77.485, 36.986, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 23.1

Other elements in 4h1p:

The structure of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength also contains other interesting chemical elements:

Europium (Eu) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength (pdb code 4h1p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength, PDB code: 4h1p:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 4h1p

Go back to Chlorine Binding Sites List in 4h1p
Chlorine binding site 1 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:27.4
occ:1.00
 O A:HOH400 3.0 34.4 1.0
OG A:SER24 3.0 25.2 1.0
N A:GLY26 3.2 16.8 1.0
CA A:GLN121 3.5 21.7 1.0
CA A:GLY26 3.5 15.1 1.0
CB A:SER24 3.7 19.6 1.0
N A:GLN121 3.9 21.3 1.0
CB A:GLN121 3.9 27.6 1.0
CG A:GLN121 4.1 33.9 1.0
CD1 A:ILE124 4.2 23.6 1.0
C A:VAL120 4.2 22.6 1.0
O A:VAL120 4.3 18.5 1.0
N A:LEU25 4.3 16.8 1.0
CG2 A:VAL120 4.3 16.5 1.0
CG1 A:ILE124 4.4 19.9 1.0
C A:LEU25 4.4 17.3 1.0
C A:SER24 4.5 19.0 1.0
C A:GLY26 4.6 15.3 1.0
N A:ASN27 4.7 16.5 1.0
CA A:SER24 4.8 17.9 1.0
C A:GLN121 4.8 24.4 1.0
CA A:LEU25 4.8 17.2 1.0
O A:SER24 4.8 16.4 1.0

Chlorine binding site 2 out of 14 in 4h1p

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Chlorine binding site 2 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:34.4
occ:1.00
 NH2 A:ARG14 3.4 25.3 1.0
N A:ILE88 3.6 21.5 1.0
CG1 A:ILE88 3.6 18.1 1.0
NE2 A:HIS15 3.8 24.6 1.0
O A:HOH353 4.0 30.9 1.0
CA A:ASP87 4.1 22.4 1.0
OD2 A:ASP87 4.1 25.3 1.0
CB A:ALA11 4.1 19.0 1.0
O A:SER86 4.3 26.4 1.0
C A:ASP87 4.3 22.8 1.0
CZ A:PHE3 4.4 20.2 1.0
CB A:ILE88 4.4 21.5 1.0
CD1 A:ILE88 4.4 18.9 1.0
CD2 A:HIS15 4.5 23.5 1.0
CZ A:ARG14 4.5 24.6 1.0
CA A:ILE88 4.5 19.8 1.0
CG A:ASP87 4.6 25.2 1.0
CG2 A:ILE88 4.6 17.6 1.0
NH1 A:ARG14 4.8 22.0 1.0
CE1 A:HIS15 4.8 23.8 1.0
CE1 A:PHE3 4.8 19.0 1.0
CB A:ASP87 4.9 22.0 1.0
N A:THR89 4.9 18.0 1.0

Chlorine binding site 3 out of 14 in 4h1p

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Chlorine binding site 3 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:43.2
occ:1.00
 ND2 A:ASN65 3.2 21.9 1.0
O A:HOH369 3.2 22.5 1.0
CB A:PRO79 3.6 19.5 1.0
CA A:PRO79 3.7 21.1 1.0
CB A:ASN65 3.9 19.9 1.0
N A:PRO79 4.0 20.7 1.0
CG A:ASN65 4.0 18.7 1.0
CD A:PRO79 4.1 22.9 1.0
CG A:PRO79 4.2 27.2 1.0
O A:ASN65 4.4 19.0 1.0
C A:ILE78 4.7 18.8 1.0
O A:ILE78 4.9 19.6 1.0
ND2 A:ASN74 4.9 24.3 1.0
C A:ASN65 4.9 20.3 1.0
CA A:ASN65 4.9 21.8 1.0

Chlorine binding site 4 out of 14 in 4h1p

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Chlorine binding site 4 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:36.6
occ:1.00
 O A:HOH392 3.1 35.7 1.0
NZ A:LYS33 3.4 22.0 1.0
CE2 A:PHE38 3.8 16.6 1.0
CZ3 A:TRP123 4.1 21.4 1.0
CE A:LYS33 4.1 19.9 1.0
CD A:LYS33 4.2 17.0 1.0
CD A:ARG5 4.3 21.1 1.0
O A:HOH408 4.3 33.5 1.0
O A:HOH344 4.3 29.2 1.0
CB A:ARG5 4.5 16.5 1.0
CZ A:PHE38 4.6 17.4 1.0
O A:HOH354 4.7 34.5 1.0
CD2 A:PHE38 4.7 18.5 1.0
NE A:ARG5 4.7 17.9 1.0
CG A:ARG5 4.8 17.4 1.0
CH2 A:TRP123 4.9 19.3 1.0
CE3 A:TRP123 5.0 18.2 1.0

Chlorine binding site 5 out of 14 in 4h1p

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Chlorine binding site 5 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:21.6
occ:1.00
 O A:HOH314 2.9 16.7 1.0
OH A:TYR23 3.1 13.9 1.0
CE2 A:TYR23 3.7 14.1 1.0
CZ A:TYR23 3.7 14.2 1.0
CA A:GLY104 4.1 14.9 1.0
O A:ARG21 4.5 16.7 1.0
N A:GLY104 4.6 17.1 1.0
CE1 A:TYR23 4.9 14.4 1.0
CD2 A:TYR23 4.9 15.4 1.0
O A:HOH401 4.9 32.7 1.0

Chlorine binding site 6 out of 14 in 4h1p

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Chlorine binding site 6 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:31.3
occ:0.76
 CL A:CL210 2.6 31.0 0.7
N A:ASN59 3.3 18.5 1.0
CL A:CL211 3.6 35.6 1.0
CA A:ILE58 3.7 17.8 1.0
O A:GLN57 3.7 13.3 1.0
CB A:ASN59 3.8 24.8 1.0
CD1 A:TRP63 3.9 22.1 1.0
NE1 A:TRP63 3.9 21.2 1.0
CD1 A:ILE98 4.0 16.3 1.0
C A:ILE58 4.0 20.4 1.0
CA A:ASN59 4.2 19.0 1.0
O A:HOH421 4.3 20.9 1.0
C A:GLN57 4.5 17.7 1.0
CB A:ILE58 4.5 21.6 1.0
N A:ILE58 4.5 15.3 1.0
CG2 A:ILE98 4.5 18.3 1.0
NE1 A:TRP108 4.6 14.8 1.0
CG2 A:ILE58 4.7 15.4 1.0
CG1 A:ILE58 4.7 19.0 1.0
CG1 A:ILE98 4.8 16.7 1.0
CE2 A:TRP108 4.9 14.4 1.0
CG A:TRP63 4.9 21.3 1.0
CD1 A:TRP108 5.0 11.6 1.0
O A:LEU56 5.0 16.6 1.0

Chlorine binding site 7 out of 14 in 4h1p

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Chlorine binding site 7 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:51.8
occ:0.47
 O A:HOH402 3.0 42.8 1.0
CB A:PRO70 4.6 32.8 1.0

Chlorine binding site 8 out of 14 in 4h1p

Go back to Chlorine Binding Sites List in 4h1p
Chlorine binding site 8 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:31.0
occ:0.71
 CL A:CL208 2.6 31.3 0.8
O A:HOH421 2.9 20.9 1.0
O A:ALA107 3.1 14.9 1.0
O A:HOH305 3.3 13.9 1.0
C A:ALA107 3.9 15.1 1.0
CD1 A:TRP108 3.9 11.6 1.0
CA A:TRP108 4.0 14.5 1.0
O A:GLN57 4.1 13.3 1.0
CL A:CL211 4.1 35.6 1.0
CG A:TRP108 4.2 15.0 1.0
NE1 A:TRP108 4.2 14.8 1.0
N A:TRP108 4.2 12.3 1.0
O A:HOH394 4.7 39.8 1.0
CB A:TRP108 4.7 12.4 1.0
CE2 A:TRP108 4.7 14.4 1.0
CD2 A:TRP108 4.7 15.7 1.0
O A:HOH371 4.7 21.9 1.0
O A:HOH362 4.9 20.4 1.0
CA A:ALA107 5.0 16.9 1.0

Chlorine binding site 9 out of 14 in 4h1p

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Chlorine binding site 9 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:35.6
occ:1.00
 NE1 A:TRP63 3.0 21.2 1.0
CL A:CL208 3.6 31.3 0.8
CE2 A:TRP63 3.9 20.4 1.0
CD1 A:TRP63 4.0 22.1 1.0
CL A:CL210 4.1 31.0 0.7
CZ2 A:TRP63 4.2 19.0 1.0
CD1 A:TRP62 4.3 26.7 1.0
CB A:ASN59 4.5 24.8 1.0
O A:ALA107 4.7 14.9 1.0
ND2 A:ASN59 4.8 34.7 1.0
CG2 A:ILE98 4.9 18.3 1.0
CB A:ALA107 4.9 16.4 1.0

Chlorine binding site 10 out of 14 in 4h1p

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Chlorine binding site 10 out of 14 in the Use of Europium For Sad Phasing at the Cu K Alpha Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Use of Europium For Sad Phasing at the Cu K Alpha Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:32.7
occ:1.00
 O A:HOH324 2.9 20.9 1.0
N A:THR69 3.2 21.9 1.0
O A:THR69 3.2 27.1 1.0
N A:ARG68 3.4 19.5 1.0
O A:HOH357 3.5 30.7 1.0
OG A:SER72 3.5 29.9 1.0
CA A:GLY67 3.5 21.1 1.0
C A:GLY67 3.6 22.2 1.0
O A:HOH395 3.6 33.5 1.0
N A:GLY67 3.6 19.0 1.0
OD1 A:ASN65 3.6 21.5 1.0
O A:HOH396 3.6 31.4 1.0
C A:THR69 3.7 28.3 1.0
CA A:THR69 3.9 27.8 1.0
OD1 A:ASP66 4.1 15.7 1.0
CB A:THR69 4.1 25.4 1.0
C A:ARG68 4.2 22.7 1.0
O A:GLY67 4.3 27.4 1.0
CA A:ARG68 4.3 18.4 1.0
N A:PRO70 4.7 28.2 1.0
NA A:NA217 4.7 32.9 1.0
CB A:SER72 4.7 30.1 1.0
C A:ASP66 4.7 19.9 1.0
OG1 A:THR69 4.8 24.3 1.0
CG A:ASN65 4.8 18.7 1.0
N A:ASP66 4.8 18.9 1.0
O A:HOH342 4.9 34.5 0.5

Reference:

B.Vijayakumar, D.Velmurugan. Use of Europium Ions For Sad Phasing of Lysozyme at the Cu Kalpha Wavelength Acta Crystallogr.,Sect.F V. 69 20 2013.
ISSN: ESSN 1744-3091
PubMed: 23295480
DOI: 10.1107/S1744309112047562
Page generated: Sun Jul 21 15:13:39 2024

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