Atomistry » Chlorine » PDB 4h1x-4h8x » 4h2w
Atomistry »
  Chlorine »
    PDB 4h1x-4h8x »
      4h2w »

Chlorine in PDB 4h2w: Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp

Protein crystallography data

The structure of Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp, PDB code: 4h2w was solved by M.Luic, I.Weygand-Durasevic, N.Ivic, M.Mocibob, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.76 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 99.695, 101.248, 102.997, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.6

Other elements in 4h2w:

The structure of Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp (pdb code 4h2w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp, PDB code: 4h2w:

Chlorine binding site 1 out of 1 in 4h2w

Go back to Chlorine Binding Sites List in 4h2w
Chlorine binding site 1 out of 1 in the Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:25.4
occ:1.00
N3 A:5GP403 2.8 22.8 0.7
N A:ARG286 3.2 10.0 1.0
N A:ASP285 3.2 9.4 1.0
C A:GLY283 3.3 12.7 1.0
CA A:GLY283 3.3 9.9 1.0
N2 A:5GP403 3.4 19.1 0.7
C2 A:5GP403 3.5 20.2 0.7
N A:MET284 3.5 10.0 1.0
CB A:ASP285 3.7 10.7 1.0
O A:GLY283 3.7 10.1 1.0
O A:ARG173 3.8 11.3 1.0
C4 A:5GP403 3.8 22.8 0.7
CA A:ASP285 3.8 10.8 1.0
C1' A:5GP403 3.8 21.6 0.7
CB A:PHE172 3.9 10.4 1.0
CD2 A:PHE172 3.9 14.7 1.0
C A:ASP285 4.0 14.0 1.0
CB A:ARG286 4.1 13.0 1.0
CG A:ARG286 4.1 15.0 1.0
N9 A:5GP403 4.2 23.8 0.7
C A:MET284 4.2 13.2 1.0
CG A:PHE172 4.2 13.9 1.0
CA A:ARG286 4.3 9.6 1.0
CA A:MET284 4.4 9.1 1.0
SD A:MET174 4.5 14.2 0.5
O2' A:5GP403 4.5 25.9 0.7
OD2 A:ASP285 4.5 16.8 1.0
CD A:ARG286 4.6 18.1 1.0
O4' A:5GP403 4.6 30.1 0.7
CG A:ASP285 4.6 20.3 1.0
N A:ARG173 4.7 12.3 1.0
C2' A:5GP403 4.7 23.0 0.7
N1 A:5GP403 4.8 11.4 0.7
C A:ARG173 4.8 12.5 1.0
N A:GLY283 4.8 9.9 1.0
CE2 A:PHE172 4.9 19.3 1.0
CA A:PHE172 5.0 12.6 1.0

Reference:

M.Mocibob, N.Ivic, M.Luic, I.Weygand-Durasevic. Adaptation of Aminoacyl-Trna Synthetase Catalytic Core to Carrier Protein Aminoacylation. Structure V. 21 614 2013.
ISSN: ISSN 0969-2126
PubMed: 23541895
DOI: 10.1016/J.STR.2013.02.017
Page generated: Fri Jul 11 16:06:58 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy