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Chlorine in PDB 4h3z: Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites

Enzymatic activity of Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites

All present enzymatic activity of Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites:
2.1.1.228;

Protein crystallography data

The structure of Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites, PDB code: 4h3z was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.20 / 2.15
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 58.850, 188.090, 127.680, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites (pdb code 4h3z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites, PDB code: 4h3z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4h3z

Go back to Chlorine Binding Sites List in 4h3z
Chlorine binding site 1 out of 2 in the Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:44.5
occ:1.00
 ND1 A:HIS100 2.9 45.2 1.0
N B:VAL141 3.1 29.9 1.0
O A:HOH472 3.2 48.2 1.0
CA B:PHE140 3.6 30.4 1.0
CE1 A:HIS159 3.7 44.9 1.0
CB B:PHE140 3.7 29.9 1.0
CG A:HIS100 3.8 45.5 1.0
C B:PHE140 3.8 30.0 1.0
CB A:HIS100 3.9 42.4 1.0
CA A:HIS100 3.9 39.7 1.0
CE1 A:HIS100 3.9 47.8 1.0
O B:VAL141 4.1 29.5 1.0
CA B:VAL141 4.2 30.4 1.0
CG1 A:VAL103 4.3 33.3 1.0
NE2 A:HIS159 4.3 42.6 1.0
CB A:VAL103 4.4 33.6 1.0
CG2 A:VAL103 4.4 33.2 1.0
CB B:VAL141 4.4 32.9 1.0
C B:VAL141 4.6 28.4 1.0
ND1 A:HIS159 4.6 43.8 1.0
N A:HIS100 4.7 38.7 1.0
O A:HIS100 4.8 38.6 1.0
C A:HIS100 4.8 39.4 1.0
CB A:ALA155 4.9 27.1 1.0
CD2 A:HIS100 5.0 45.6 1.0
N B:PHE140 5.0 30.2 1.0

Chlorine binding site 2 out of 2 in 4h3z

Go back to Chlorine Binding Sites List in 4h3z
Chlorine binding site 2 out of 2 in the Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Symmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in Both Half-Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:36.8
occ:1.00
 ND1 B:HIS100 3.0 34.7 1.0
N A:VAL141 3.3 23.6 1.0
O B:HOH495 3.3 50.4 1.0
CA A:PHE140 3.6 24.8 1.0
CE1 B:HIS159 3.7 38.5 1.0
CB A:PHE140 3.7 25.9 1.0
CA B:HIS100 3.9 35.4 1.0
CG B:HIS100 3.9 35.0 1.0
C A:PHE140 3.9 24.4 1.0
CE1 B:HIS100 4.0 35.7 1.0
CB B:HIS100 4.0 36.1 1.0
O A:VAL141 4.1 25.1 1.0
CG1 B:VAL103 4.3 27.9 1.0
CA A:VAL141 4.3 23.9 1.0
CB B:VAL103 4.3 28.6 1.0
NE2 B:HIS159 4.3 37.2 1.0
CG2 B:VAL103 4.3 27.9 1.0
CB A:VAL141 4.4 24.0 1.0
N B:HIS100 4.6 32.3 1.0
ND1 B:HIS159 4.7 38.0 1.0
C A:VAL141 4.7 23.5 1.0
O B:HIS100 4.8 35.5 1.0
CB B:ALA155 4.8 23.7 1.0
C B:HIS100 4.9 36.3 1.0
CG2 A:VAL141 4.9 24.4 1.0
N A:PHE140 5.0 26.1 1.0

Reference:

L.Baugh, L.A.Gallagher, R.Patrapuvich, M.C.Clifton, A.S.Gardberg, T.E.Edwards, B.Armour, D.W.Begley, S.H.Dieterich, D.M.Dranow, J.Abendroth, J.W.Fairman, D.Fox, B.L.Staker, I.Phan, A.Gillespie, R.Choi, S.Nakazawa-Hewitt, M.T.Nguyen, A.Napuli, L.Barrett, G.W.Buchko, R.Stacy, P.J.Myler, L.J.Stewart, C.Manoil, W.C.Van Voorhis. Combining Functional and Structural Genomics to Sample the Essential Burkholderia Structome. Plos One V. 8 53851 2013.
ISSN: ESSN 1932-6203
PubMed: 23382856
DOI: 10.1371/JOURNAL.PONE.0053851
Page generated: Sun Jul 21 15:26:19 2024

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