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Chlorine in PDB 4h5n: HSC70 Nbd with PO4, Na, Cl

Protein crystallography data

The structure of HSC70 Nbd with PO4, Na, Cl, PDB code: 4h5n was solved by B.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.00 / 1.86
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 133.802, 101.693, 77.421, 90.00, 119.28, 90.00
R / Rfree (%) 19 / 24.8

Other elements in 4h5n:

The structure of HSC70 Nbd with PO4, Na, Cl also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the HSC70 Nbd with PO4, Na, Cl (pdb code 4h5n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the HSC70 Nbd with PO4, Na, Cl, PDB code: 4h5n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4h5n

Go back to Chlorine Binding Sites List in 4h5n
Chlorine binding site 1 out of 2 in the HSC70 Nbd with PO4, Na, Cl


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of HSC70 Nbd with PO4, Na, Cl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:40.0
occ:1.00
OG1 A:THR14 2.9 20.1 1.0
O A:HOH756 3.1 29.0 1.0
N A:THR14 3.1 16.3 1.0
N A:TYR15 3.2 16.8 1.0
O A:HOH534 3.2 16.0 1.0
N A:THR13 3.7 13.7 1.0
CA A:THR14 3.7 17.1 1.0
CB A:THR14 3.7 17.6 1.0
NA A:NA407 3.8 32.0 1.0
C A:THR14 3.9 16.1 1.0
O A:TYR15 3.9 15.3 1.0
O1 A:PO4401 4.1 19.3 1.0
CG2 A:THR14 4.1 16.4 1.0
O A:HOH710 4.2 23.8 1.0
CA A:TYR15 4.2 17.6 1.0
C A:GLY12 4.2 13.5 1.0
N A:GLY202 4.2 16.2 1.0
C A:THR13 4.2 15.6 1.0
CA A:GLY12 4.3 12.5 1.0
O3 A:PO4401 4.3 24.0 1.0
CA A:THR13 4.3 14.7 1.0
CB A:TYR15 4.4 19.7 1.0
CB A:THR13 4.4 14.2 1.0
O A:HOH740 4.5 24.2 1.0
C A:TYR15 4.5 16.0 1.0
P A:PO4401 4.7 20.4 1.0
CA A:GLY201 4.8 15.8 1.0
CD1 A:TYR15 4.8 28.3 1.0
O4 A:PO4401 4.9 21.4 1.0
CA A:GLY202 5.0 16.2 1.0

Chlorine binding site 2 out of 2 in 4h5n

Go back to Chlorine Binding Sites List in 4h5n
Chlorine binding site 2 out of 2 in the HSC70 Nbd with PO4, Na, Cl


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of HSC70 Nbd with PO4, Na, Cl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl407

b:38.5
occ:1.00
OG1 B:THR14 2.8 19.8 1.0
N B:THR14 3.0 14.9 1.0
N B:TYR15 3.2 15.6 1.0
O B:HOH716 3.2 24.4 1.0
O B:HOH543 3.3 21.7 1.0
CA B:THR14 3.5 16.4 1.0
CB B:THR14 3.6 16.6 1.0
N B:THR13 3.8 12.6 1.0
C B:THR14 3.8 16.6 1.0
O B:TYR15 3.9 14.7 1.0
CG2 B:THR14 4.0 15.3 1.0
NA B:NA408 4.0 36.2 1.0
C B:THR13 4.0 14.5 1.0
N B:GLY202 4.1 15.9 1.0
CA B:TYR15 4.2 17.0 1.0
O B:HOH739 4.2 20.1 1.0
C B:GLY12 4.2 13.1 1.0
CB B:TYR15 4.2 18.6 1.0
CA B:THR13 4.3 13.3 1.0
O4 B:PO4401 4.3 15.9 1.0
CA B:GLY12 4.3 12.6 1.0
CB B:THR13 4.4 14.1 1.0
O2 B:PO4401 4.5 20.9 1.0
C B:TYR15 4.5 16.0 1.0
CA B:GLY202 4.8 17.2 1.0
CD1 B:TYR15 4.8 26.1 1.0
P B:PO4401 4.9 21.3 1.0
CA B:GLY201 4.9 16.3 1.0
O B:GLY12 4.9 12.6 1.0

Reference:

Z.Ziming, J.Cellitti, P.Teriete, M.Pellecchia, B.Stec. New Crystal Structures of Hsc-70 Atp Binding Domain Confirm the Role of Individual Binding Pockets and Suggests A New Method of Inhibition To Be Published.
Page generated: Sun Jul 21 15:28:53 2024

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