Atomistry » Chlorine » PDB 4hdp-4hmm » 4hga
Atomistry »
  Chlorine »
    PDB 4hdp-4hmm »
      4hga »

Chlorine in PDB 4hga: Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx

Protein crystallography data

The structure of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx, PDB code: 4hga was solved by C.P.Liu, C.Y.Xiong, M.Z.Wang, Z.L.Yu, N.Yang, P.Chen, Z.G.Zhang, G.H.Li, R.M.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.93 / 2.80
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 72.103, 72.103, 323.550, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 27.1

Other elements in 4hga:

The structure of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx also contains other interesting chemical elements:

Platinum (Pt) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx (pdb code 4hga). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx, PDB code: 4hga:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 1 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:0.9
occ:0.50
CL1 A:PC4401 0.0 0.9 0.5
PT A:PC4401 2.4 0.7 0.5
CL4 A:PC4401 3.4 0.2 0.5
CL2 A:PC4401 3.4 74.3 0.5
CG A:PRO258 3.8 70.8 1.0
CB A:PRO258 4.1 73.5 1.0
O A:PRO258 4.3 73.3 1.0
NH1 A:ARG323 4.3 86.2 1.0
CG A:ARG260 4.4 97.6 1.0
CB A:ARG260 4.4 93.9 1.0
C A:PRO258 4.5 74.4 1.0
N A:ARG260 4.5 85.3 1.0
CL3 A:PC4401 4.9 77.7 0.5
N A:TYR259 4.9 75.2 1.0
CA A:PRO258 4.9 72.8 1.0

Chlorine binding site 2 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 2 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:74.3
occ:0.50
CL2 A:PC4401 0.0 74.3 0.5
PT A:PC4401 2.4 0.7 0.5
N A:ARG260 2.6 85.3 1.0
NH2 A:ARG323 2.7 86.8 1.0
NH1 A:ARG323 3.3 86.2 1.0
CL3 A:PC4401 3.4 77.7 0.5
CL1 A:PC4401 3.4 0.9 0.5
N A:GLY261 3.5 88.4 1.0
CA A:TYR259 3.5 74.5 1.0
CA A:ARG260 3.5 91.5 1.0
CZ A:ARG323 3.5 84.1 1.0
C A:ARG260 3.5 91.5 1.0
C A:TYR259 3.5 81.7 1.0
CB A:ARG260 3.9 93.9 1.0
CD1 A:TYR259 3.9 71.3 1.0
O A:PRO258 4.0 73.3 1.0
CA A:GLY261 4.1 87.3 1.0
O A:ARG260 4.1 94.6 1.0
CG A:TYR259 4.3 72.7 1.0
N A:TYR259 4.4 75.2 1.0
CB A:TYR259 4.4 71.9 1.0
CE1 A:TYR259 4.4 73.0 1.0
C A:PRO258 4.5 74.4 1.0
CG A:ARG260 4.7 97.6 1.0
O A:TYR259 4.7 83.3 1.0
NE A:ARG323 4.8 75.7 1.0
CL4 A:PC4401 4.8 0.2 0.5

Chlorine binding site 3 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 3 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:77.7
occ:0.50
CL3 A:PC4401 0.0 77.7 0.5
PT A:PC4401 2.4 0.7 0.5
CL2 A:PC4401 3.4 74.3 0.5
CL4 A:PC4401 3.5 0.2 0.5
NH2 A:ARG323 4.2 86.8 1.0
O A:ARG260 4.4 94.6 1.0
CA A:GLY261 4.7 87.3 1.0
C A:ARG260 4.7 91.5 1.0
CL1 A:PC4401 4.9 0.9 0.5
N A:GLY261 4.9 88.4 1.0

Chlorine binding site 4 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 4 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:0.2
occ:0.50
CL4 A:PC4401 0.0 0.2 0.5
PT A:PC4401 2.4 0.7 0.5
CL1 A:PC4401 3.4 0.9 0.5
CL3 A:PC4401 3.5 77.7 0.5
CL2 A:PC4401 4.8 74.3 0.5

Chlorine binding site 5 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 5 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:96.5
occ:0.90
CL2 A:PC4402 0.0 96.5 0.9
PT A:PC4402 2.4 0.7 0.9
CB A:THR262 3.5 86.4 1.0
CL3 A:PC4402 3.5 0.5 0.9
SD A:MET312 3.8 0.4 1.0
N A:ARG263 3.8 96.1 1.0
CD2 A:TYR264 3.8 0.1 1.0
CA A:THR262 3.9 89.3 1.0
CE2 A:TYR264 4.0 0.1 1.0
CG2 A:THR262 4.3 81.2 1.0
CG A:MET312 4.3 78.9 1.0
OG1 A:THR262 4.3 87.9 1.0
C A:THR262 4.4 93.0 1.0
CG A:ARG263 4.4 0.1 1.0
CL4 A:PC4402 4.9 0.9 0.9
CA A:ARG263 4.9 99.6 1.0
N A:TYR264 5.0 99.2 1.0
CB A:MET312 5.0 78.5 1.0

Chlorine binding site 6 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 6 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:0.5
occ:0.90
CL3 A:PC4402 0.0 0.5 0.9
PT A:PC4402 2.4 0.7 0.9
CL4 A:PC4402 3.4 0.9 0.9
CL2 A:PC4402 3.5 96.5 0.9
CE2 A:TYR264 3.6 0.1 1.0
OH A:TYR264 4.1 1.0 1.0
CZ A:TYR264 4.3 0.5 1.0
OE1 A:GLN308 4.4 99.8 1.0
CD2 A:TYR264 4.5 0.1 1.0

Chlorine binding site 7 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 7 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:0.9
occ:0.90
CL4 A:PC4402 0.0 0.9 0.9
PT A:PC4402 2.4 0.7 0.9
O A:GLN308 3.1 88.4 1.0
CL3 A:PC4402 3.4 0.5 0.9
CE A:MET312 3.4 87.2 1.0
C A:GLN308 3.4 91.0 1.0
CB A:MET312 3.6 78.5 1.0
CB A:GLN308 3.7 90.8 1.0
N A:LEU309 3.9 94.0 1.0
SD A:MET312 3.9 0.4 1.0
CA A:GLN308 4.1 90.9 1.0
CA A:LEU309 4.2 92.4 1.0
CG A:MET312 4.3 78.9 1.0
CG A:GLN308 4.5 90.2 1.0
OE1 A:GLN308 4.7 99.8 1.0
CD2 A:LEU309 4.8 0.2 1.0
CA A:MET312 4.8 76.5 1.0
CL2 A:PC4402 4.9 96.5 0.9
N A:MET312 4.9 77.6 1.0
CD A:GLN308 5.0 98.2 1.0

Chlorine binding site 8 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 8 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:0.1
occ:0.60
CL1 B:PC4201 0.0 0.1 0.6
PT B:PC4201 2.4 0.1 0.6
CD1 C:LEU49 3.5 86.8 1.0
CL4 B:PC4201 3.5 0.6 0.6
OG C:SER47 4.2 94.4 1.0
CB A:SER386 4.3 0.2 1.0
CG A:GLN383 4.5 99.4 1.0
OG A:SER386 4.7 0.5 1.0
CG C:LEU49 5.0 83.1 1.0

Chlorine binding site 9 out of 9 in 4hga

Go back to Chlorine Binding Sites List in 4hga
Chlorine binding site 9 out of 9 in the Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:0.6
occ:0.60
CL4 B:PC4201 0.0 0.6 0.6
PT B:PC4201 2.4 0.1 0.6
NE2 A:GLN383 3.4 94.8 1.0
CL1 B:PC4201 3.5 0.1 0.6
CG A:GLN383 3.7 99.4 1.0
SD B:MET120 3.8 0.6 1.0
CD A:GLN383 4.0 94.8 1.0
CE B:MET120 4.2 76.5 1.0
CB A:GLU387 4.2 0.9 1.0
O A:GLN383 4.5 0.6 1.0
CG B:MET120 4.8 84.2 1.0

Reference:

C.P.Liu, C.Y.Xiong, M.Z.Wang, Z.L.Yu, N.Yang, P.Chen, Z.G.Zhang, G.H.Li, R.M.Xu. Structure of the Variant Histone H3.3-H4 Heterodimer in Complex with Its Chaperone Daxx. Nat.Struct.Mol.Biol. V. 19 1287 2012.
ISSN: ISSN 1545-9993
PubMed: 23142979
DOI: 10.1038/NSMB.2439
Page generated: Sat Dec 12 10:42:44 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy