Chlorine in PDB 4hi6: Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
Protein crystallography data
The structure of Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein, PDB code: 4hi6
was solved by
P.Dautel,
P.Kolenko,
M.T.Stubbs,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.49 /
2.20
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
158.066,
158.066,
103.714,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.9 /
n/a
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
(pdb code 4hi6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein, PDB code: 4hi6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4hi6
Go back to
Chlorine Binding Sites List in 4hi6
Chlorine binding site 1 out
of 5 in the Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:45.1
occ:1.00
|
O
|
A:HOH312
|
2.7
|
40.4
|
1.0
|
N
|
A:LYS11
|
3.2
|
32.2
|
1.0
|
O
|
A:GLU9
|
3.4
|
36.0
|
1.0
|
CA
|
A:LEU10
|
3.7
|
32.2
|
1.0
|
C
|
A:LEU10
|
3.9
|
30.7
|
1.0
|
CB
|
A:LYS11
|
3.9
|
30.2
|
1.0
|
CG1
|
A:VAL14
|
4.0
|
27.4
|
1.0
|
CA
|
A:LYS11
|
4.1
|
31.4
|
1.0
|
CG
|
A:LYS11
|
4.1
|
30.6
|
1.0
|
C
|
A:GLU9
|
4.3
|
36.4
|
1.0
|
CD1
|
A:LEU10
|
4.4
|
33.9
|
1.0
|
CB
|
A:PRO96
|
4.5
|
36.6
|
1.0
|
N
|
A:LEU10
|
4.5
|
34.5
|
1.0
|
CD
|
A:LYS11
|
4.6
|
31.5
|
1.0
|
O
|
A:PRO96
|
4.6
|
35.0
|
1.0
|
O
|
A:LYS11
|
4.6
|
35.2
|
1.0
|
C
|
A:LYS11
|
4.8
|
31.2
|
1.0
|
CB
|
A:LEU10
|
4.8
|
32.4
|
1.0
|
CG
|
A:LEU10
|
4.9
|
31.8
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4hi6
Go back to
Chlorine Binding Sites List in 4hi6
Chlorine binding site 2 out
of 5 in the Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl202
b:37.8
occ:1.00
|
N
|
B:GLU9
|
3.4
|
31.2
|
1.0
|
CB
|
B:GLU9
|
3.7
|
30.4
|
1.0
|
CE1
|
B:PHE102
|
3.9
|
34.9
|
1.0
|
CA
|
B:VAL8
|
3.9
|
30.7
|
1.0
|
CZ
|
B:PHE102
|
4.1
|
32.8
|
1.0
|
C
|
B:VAL8
|
4.1
|
29.9
|
1.0
|
CA
|
B:GLU9
|
4.2
|
31.2
|
1.0
|
O
|
B:HOH331
|
4.3
|
39.7
|
1.0
|
O
|
B:HOH330
|
4.4
|
34.3
|
1.0
|
CB
|
B:VAL8
|
4.4
|
31.8
|
1.0
|
O
|
B:TYR7
|
4.5
|
34.2
|
1.0
|
OE1
|
B:GLU9
|
4.6
|
33.3
|
1.0
|
CG1
|
B:VAL8
|
5.0
|
32.2
|
1.0
|
CG
|
B:GLU9
|
5.0
|
31.7
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4hi6
Go back to
Chlorine Binding Sites List in 4hi6
Chlorine binding site 3 out
of 5 in the Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:54.9
occ:1.00
|
N
|
B:LYS13
|
3.2
|
38.0
|
1.0
|
CB
|
B:LYS13
|
3.7
|
39.3
|
1.0
|
CB
|
B:ASP12
|
3.7
|
33.9
|
1.0
|
N
|
B:ASP12
|
3.8
|
33.1
|
1.0
|
CA
|
B:LYS13
|
3.9
|
38.8
|
1.0
|
C
|
B:ASP12
|
4.0
|
37.5
|
1.0
|
CB
|
B:LYS11
|
4.0
|
34.2
|
1.0
|
CA
|
B:ASP12
|
4.0
|
34.8
|
1.0
|
CG
|
B:LYS13
|
4.1
|
42.2
|
1.0
|
CD
|
B:LYS13
|
4.2
|
43.1
|
1.0
|
C
|
B:LYS11
|
4.5
|
34.6
|
1.0
|
O
|
B:HOH313
|
4.5
|
44.8
|
1.0
|
CD
|
B:LYS11
|
4.6
|
35.8
|
1.0
|
CA
|
B:LYS11
|
4.8
|
33.4
|
1.0
|
CG
|
B:LYS11
|
4.9
|
35.8
|
1.0
|
CG
|
B:ASP12
|
5.0
|
34.8
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4hi6
Go back to
Chlorine Binding Sites List in 4hi6
Chlorine binding site 4 out
of 5 in the Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl201
b:47.9
occ:1.00
|
N
|
C:LYS13
|
3.3
|
31.8
|
1.0
|
N
|
C:ASP12
|
3.3
|
34.5
|
1.0
|
CB
|
C:LYS11
|
3.6
|
39.1
|
1.0
|
CB
|
C:ASP12
|
3.8
|
35.7
|
1.0
|
CB
|
C:LYS13
|
3.9
|
32.9
|
1.0
|
CE
|
C:LYS13
|
3.9
|
34.1
|
1.0
|
CA
|
C:ASP12
|
3.9
|
35.5
|
1.0
|
CG
|
C:LYS13
|
3.9
|
34.5
|
1.0
|
C
|
C:ASP12
|
4.1
|
32.0
|
1.0
|
C
|
C:LYS11
|
4.1
|
35.7
|
1.0
|
CA
|
C:LYS13
|
4.2
|
32.9
|
1.0
|
CA
|
C:LYS11
|
4.4
|
36.3
|
1.0
|
CD
|
C:LYS13
|
4.5
|
34.3
|
1.0
|
CD
|
C:LYS11
|
4.5
|
44.0
|
1.0
|
CG
|
C:LYS11
|
4.7
|
40.8
|
1.0
|
CG
|
C:ASP12
|
4.7
|
36.4
|
1.0
|
OD2
|
C:ASP12
|
4.8
|
38.1
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4hi6
Go back to
Chlorine Binding Sites List in 4hi6
Chlorine binding site 5 out
of 5 in the Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of H112W Mutant of Borna Disease Virus Matrix Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl202
b:32.1
occ:1.00
|
O
|
C:HOH303
|
3.1
|
35.1
|
1.0
|
CE2
|
C:PHE121
|
3.9
|
29.7
|
1.0
|
CD2
|
C:PHE121
|
4.1
|
29.8
|
1.0
|
CG1
|
C:VAL29
|
4.3
|
30.1
|
1.0
|
|
Reference:
P.Dautel,
P.Kolenko,
M.T.Stubbs.
Matrix Protein Variants Provide Support For Alternative Borna Disease Virus Infection Pathway To Be Published.
Page generated: Sun Jul 21 15:52:42 2024
|