Atomistry » Chlorine » PDB 4i22-4ibe » 4i7o
Atomistry »
  Chlorine »
    PDB 4i22-4ibe »
      4i7o »

Chlorine in PDB 4i7o: T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound

Enzymatic activity of T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound

All present enzymatic activity of T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound:
3.2.1.17;

Protein crystallography data

The structure of T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound, PDB code: 4i7o was solved by M.Merski, B.K.Shoichet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 1.73
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.320, 75.340, 52.760, 90.00, 93.22, 90.00
R / Rfree (%) 16.8 / 19.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound (pdb code 4i7o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound, PDB code: 4i7o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4i7o

Go back to Chlorine Binding Sites List in 4i7o
Chlorine binding site 1 out of 2 in the T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:24.6
occ:0.80
CLG A:1DH202 0.0 24.6 0.8
CAG A:1DH202 1.7 20.6 0.8
CAC A:1DH202 2.7 15.0 0.8
SAE A:1DH202 3.0 21.5 0.8
O A:LEU84 3.3 7.8 1.0
N A:TYR88 3.7 8.1 1.0
CB A:TYR88 3.8 8.6 1.0
NAD A:1DH202 3.9 13.3 0.8
CA A:TYR88 3.9 7.3 1.0
CB A:LEU84 4.0 10.6 1.0
CB A:ALA99 4.0 6.0 1.0
C A:LEU84 4.1 9.7 1.0
CB A:VAL87 4.1 8.3 1.0
CAF A:1DH202 4.1 13.1 0.8
CA A:LEU84 4.2 9.0 1.0
CD2 A:LEU84 4.2 11.6 1.0
CG2 A:ILE78 4.2 10.1 1.0
CG1 A:VAL87 4.2 6.8 1.0
C A:VAL87 4.4 7.7 1.0
CD1 A:TYR88 4.5 6.9 1.0
CG A:LEU84 4.6 9.7 1.0
CG A:TYR88 4.7 7.1 1.0
CD1 A:ILE78 4.7 7.8 1.0
CG1 A:ILE78 4.7 4.7 1.0
CA A:VAL87 4.8 7.5 1.0
CD2 A:LEU118 4.9 11.9 1.0
CD1 A:LEU84 5.0 8.9 1.0

Chlorine binding site 2 out of 2 in 4i7o

Go back to Chlorine Binding Sites List in 4i7o
Chlorine binding site 2 out of 2 in the T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of T4 Lysozyme L99A/M102H with 2-Amino-5-Chlorothiazole Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:24.0
occ:0.80
CLG B:1DH203 0.0 24.0 0.8
CAG B:1DH203 1.7 18.9 0.8
CAC B:1DH203 2.7 16.1 0.8
SAE B:1DH203 3.0 21.6 0.8
O B:LEU84 3.4 8.8 1.0
N B:TYR88 3.6 8.0 1.0
CB B:TYR88 3.7 7.6 1.0
CA B:TYR88 3.9 8.6 1.0
NAD B:1DH203 3.9 14.4 0.8
CB B:ALA99 4.0 5.0 1.0
CB B:LEU84 4.0 6.4 1.0
C B:LEU84 4.1 8.7 1.0
CAF B:1DH203 4.1 15.2 0.8
CA B:LEU84 4.2 7.1 1.0
CD2 B:LEU84 4.2 8.8 1.0
CB B:VAL87 4.2 10.9 1.0
CG2 B:ILE78 4.3 8.9 1.0
CG1 B:VAL87 4.3 12.2 1.0
CD1 B:TYR88 4.4 6.8 1.0
C B:VAL87 4.4 7.7 1.0
CG B:TYR88 4.6 6.6 1.0
CG B:LEU84 4.6 8.4 1.0
CD1 B:ILE78 4.7 5.4 1.0
CG1 B:ILE78 4.7 4.7 1.0
CD2 B:LEU118 4.8 14.7 1.0
CA B:VAL87 4.9 9.2 1.0
CD1 B:LEU91 4.9 7.8 1.0

Reference:

M.Merski, B.K.Shoichet. The Impact of Introducing A Histidine Into An Apolar Cavity Site on Docking and Ligand Recognition. J.Med.Chem. V. 56 2874 2013.
ISSN: ISSN 0022-2623
PubMed: 23473072
DOI: 10.1021/JM301823G
Page generated: Sun Jul 21 16:26:26 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy