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Chlorine in PDB 4icn: Dihydrodipicolinate Synthase From Shewanella Benthica

Protein crystallography data

The structure of Dihydrodipicolinate Synthase From Shewanella Benthica, PDB code: 4icn was solved by J.M.Wubben, J.J.Paxman, C.Dogovski, M.W.Parker, M.A.Perugini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.33 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.090, 84.030, 143.720, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 25

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dihydrodipicolinate Synthase From Shewanella Benthica (pdb code 4icn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Dihydrodipicolinate Synthase From Shewanella Benthica, PDB code: 4icn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4icn

Go back to Chlorine Binding Sites List in 4icn
Chlorine binding site 1 out of 2 in the Dihydrodipicolinate Synthase From Shewanella Benthica


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dihydrodipicolinate Synthase From Shewanella Benthica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:52.3
occ:1.00
O1 A:SO4304 3.3 76.8 1.0
NH2 A:ARG138 3.9 43.9 1.0
CD1 A:PHE244 3.9 47.7 1.0
N A:ASN248 4.0 35.0 1.0
CA A:ALA247 4.2 36.2 1.0
NZ B:LYS109 4.2 45.0 1.0
O2 A:SO4304 4.2 77.0 1.0
S A:SO4304 4.4 76.8 1.0
CB A:ASN248 4.5 33.5 1.0
CB A:ALA247 4.6 36.5 1.0
CZ A:ARG138 4.6 43.3 1.0
CE B:LYS109 4.6 43.7 1.0
C A:ALA247 4.7 35.7 1.0
CB A:PHE244 4.7 42.5 1.0
CE1 A:PHE244 4.7 46.8 1.0
NE A:ARG138 4.7 44.7 1.0
CG A:PHE244 4.8 45.3 1.0
CA A:ASN248 4.9 33.3 1.0

Chlorine binding site 2 out of 2 in 4icn

Go back to Chlorine Binding Sites List in 4icn
Chlorine binding site 2 out of 2 in the Dihydrodipicolinate Synthase From Shewanella Benthica


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dihydrodipicolinate Synthase From Shewanella Benthica within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:57.5
occ:1.00
NE B:ARG138 3.7 45.4 1.0
ND2 B:ASN248 4.0 31.2 1.0
O1 B:SO4302 4.2 66.3 1.0
NH2 B:ARG138 4.3 43.1 1.0
O3 B:SO4302 4.4 63.8 1.0
CB B:ASN248 4.4 33.8 1.0
CZ B:ARG138 4.4 42.4 1.0
CE2 B:PHE244 4.4 40.4 1.0
CD B:ARG138 4.5 42.5 1.0
OH B:TYR133 4.6 49.1 1.0
CG B:ASN248 4.6 33.7 1.0
O4 B:SO4302 4.6 65.8 1.0
S B:SO4302 4.7 65.3 1.0
O B:HOH422 5.0 45.0 1.0

Reference:

J.M.Wubben, J.J.Paxman, C.Dogovski, M.W.Parker, M.A.Perugini. Cold Enzymology Offers Insight Into Molecular Evolution in Quaternary Structure To Be Published.
Page generated: Sat Dec 12 10:45:17 2020

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