Chlorine in PDB 4ien: Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
Enzymatic activity of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
All present enzymatic activity of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18:
3.1.2.20;
Protein crystallography data
The structure of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18, PDB code: 4ien
was solved by
Y.B.Khandokar,
J.K.Forwood,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.95 /
2.00
|
Space group
|
P 21 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
152.520,
152.520,
152.520,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.7 /
19.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
(pdb code 4ien). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18, PDB code: 4ien:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 4ien
Go back to
Chlorine Binding Sites List in 4ien
Chlorine binding site 1 out
of 4 in the Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:15.5
occ:1.00
|
O
|
B:HOH354
|
2.8
|
27.5
|
1.0
|
N
|
B:THR56
|
3.2
|
14.9
|
1.0
|
O
|
A:HOH303
|
3.2
|
16.5
|
1.0
|
N
|
A:GLY31
|
3.2
|
15.8
|
1.0
|
ND2
|
A:ASN24
|
3.4
|
18.8
|
1.0
|
CA
|
B:VAL55
|
3.7
|
17.0
|
1.0
|
C3P
|
B:COA202
|
3.7
|
13.0
|
1.0
|
OG1
|
B:THR56
|
3.8
|
16.4
|
1.0
|
CA
|
A:GLY31
|
3.8
|
16.4
|
1.0
|
N4P
|
B:COA202
|
3.9
|
13.8
|
1.0
|
CB
|
B:THR56
|
3.9
|
16.5
|
1.0
|
C
|
B:VAL55
|
4.0
|
16.4
|
1.0
|
CB
|
B:VAL55
|
4.0
|
19.1
|
1.0
|
CA
|
B:THR56
|
4.1
|
15.0
|
1.0
|
ND1
|
A:HIS30
|
4.2
|
18.0
|
1.0
|
C
|
A:HIS30
|
4.3
|
15.6
|
1.0
|
CA
|
A:HIS30
|
4.4
|
15.3
|
1.0
|
CG1
|
B:VAL55
|
4.5
|
18.1
|
1.0
|
O
|
A:VAL29
|
4.5
|
16.0
|
1.0
|
C5P
|
B:COA202
|
4.6
|
14.1
|
1.0
|
CG
|
A:ASN24
|
4.6
|
19.0
|
1.0
|
O
|
B:CYS54
|
4.7
|
21.3
|
1.0
|
CE1
|
B:TYR43
|
4.7
|
21.8
|
1.0
|
CD1
|
B:TYR43
|
4.7
|
22.7
|
1.0
|
CE1
|
A:HIS30
|
4.8
|
17.4
|
1.0
|
O
|
B:THR56
|
4.8
|
14.7
|
1.0
|
OD2
|
B:ASP39
|
4.9
|
15.1
|
1.0
|
C
|
B:THR56
|
5.0
|
15.5
|
1.0
|
O5P
|
B:COA202
|
5.0
|
16.4
|
1.0
|
N
|
B:VAL55
|
5.0
|
17.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 4ien
Go back to
Chlorine Binding Sites List in 4ien
Chlorine binding site 2 out
of 4 in the Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:14.3
occ:1.00
|
O
|
A:HOH377
|
2.9
|
33.0
|
1.0
|
N
|
B:GLY31
|
3.1
|
14.3
|
1.0
|
O
|
B:HOH301
|
3.2
|
16.1
|
1.0
|
N
|
A:THR56
|
3.2
|
14.2
|
1.0
|
ND2
|
B:ASN24
|
3.4
|
18.5
|
1.0
|
CA
|
A:VAL55
|
3.7
|
14.6
|
1.0
|
C3P
|
A:COA201
|
3.7
|
14.0
|
1.0
|
CA
|
B:GLY31
|
3.8
|
14.8
|
1.0
|
OG1
|
A:THR56
|
3.8
|
16.4
|
1.0
|
N4P
|
A:COA201
|
3.9
|
12.8
|
1.0
|
C
|
A:VAL55
|
3.9
|
16.2
|
1.0
|
CB
|
A:THR56
|
4.0
|
16.8
|
1.0
|
CB
|
A:VAL55
|
4.0
|
15.2
|
1.0
|
CA
|
A:THR56
|
4.1
|
13.7
|
1.0
|
C
|
B:HIS30
|
4.2
|
14.9
|
1.0
|
ND1
|
B:HIS30
|
4.2
|
21.1
|
1.0
|
CA
|
B:HIS30
|
4.3
|
16.2
|
1.0
|
CG1
|
A:VAL55
|
4.5
|
15.2
|
1.0
|
O
|
B:VAL29
|
4.5
|
15.5
|
1.0
|
C5P
|
A:COA201
|
4.5
|
14.1
|
1.0
|
CG
|
B:ASN24
|
4.6
|
19.7
|
1.0
|
CE1
|
A:TYR43
|
4.7
|
23.1
|
1.0
|
CD1
|
A:TYR43
|
4.7
|
22.8
|
1.0
|
O
|
A:CYS54
|
4.7
|
18.1
|
1.0
|
CE1
|
B:HIS30
|
4.8
|
21.9
|
1.0
|
O
|
A:THR56
|
4.8
|
15.9
|
1.0
|
O5P
|
A:COA201
|
4.9
|
14.6
|
1.0
|
OD2
|
A:ASP39
|
4.9
|
15.4
|
1.0
|
N
|
A:VAL55
|
5.0
|
15.1
|
1.0
|
C
|
A:THR56
|
5.0
|
14.8
|
1.0
|
CG
|
B:HIS30
|
5.0
|
19.8
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 4ien
Go back to
Chlorine Binding Sites List in 4ien
Chlorine binding site 3 out
of 4 in the Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl203
b:15.6
occ:1.00
|
O
|
D:HOH360
|
2.8
|
30.0
|
1.0
|
O
|
C:HOH303
|
3.1
|
17.3
|
1.0
|
N
|
C:GLY31
|
3.1
|
15.5
|
1.0
|
N
|
D:THR56
|
3.2
|
15.5
|
1.0
|
ND2
|
C:ASN24
|
3.4
|
20.8
|
1.0
|
CA
|
C:GLY31
|
3.7
|
17.3
|
1.0
|
CA
|
D:VAL55
|
3.7
|
16.7
|
1.0
|
OG1
|
D:THR56
|
3.8
|
17.9
|
1.0
|
C3P
|
D:COA202
|
3.8
|
13.3
|
1.0
|
N4P
|
D:COA202
|
3.9
|
13.6
|
1.0
|
C
|
D:VAL55
|
4.0
|
15.7
|
1.0
|
CB
|
D:VAL55
|
4.0
|
18.0
|
1.0
|
CB
|
D:THR56
|
4.0
|
16.9
|
1.0
|
CA
|
D:THR56
|
4.1
|
15.3
|
1.0
|
ND1
|
C:HIS30
|
4.2
|
19.0
|
1.0
|
C
|
C:HIS30
|
4.2
|
16.9
|
1.0
|
CA
|
C:HIS30
|
4.3
|
17.2
|
1.0
|
CG1
|
D:VAL55
|
4.5
|
18.9
|
1.0
|
C5P
|
D:COA202
|
4.5
|
14.1
|
1.0
|
O
|
C:VAL29
|
4.5
|
17.2
|
1.0
|
CG
|
C:ASN24
|
4.6
|
18.9
|
1.0
|
O
|
D:CYS54
|
4.7
|
19.0
|
1.0
|
CE1
|
C:HIS30
|
4.7
|
20.5
|
1.0
|
CE1
|
D:TYR43
|
4.8
|
23.3
|
1.0
|
CD1
|
D:TYR43
|
4.8
|
23.9
|
1.0
|
O
|
D:THR56
|
4.8
|
16.2
|
1.0
|
O5P
|
D:COA202
|
4.8
|
13.8
|
1.0
|
OD1
|
D:ASP39
|
4.9
|
17.7
|
1.0
|
N
|
D:VAL55
|
4.9
|
16.4
|
1.0
|
CG
|
C:HIS30
|
4.9
|
18.8
|
1.0
|
C
|
D:THR56
|
5.0
|
16.2
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 4ien
Go back to
Chlorine Binding Sites List in 4ien
Chlorine binding site 4 out
of 4 in the Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Acyl-Coa Hydrolase From Neisseria Meningitidis FAM18 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl201
b:16.4
occ:1.00
|
O
|
C:HOH362
|
2.9
|
32.5
|
1.0
|
O
|
D:HOH314
|
3.2
|
20.8
|
1.0
|
N
|
D:GLY31
|
3.2
|
16.5
|
1.0
|
N
|
C:THR56
|
3.2
|
17.8
|
1.0
|
ND2
|
D:ASN24
|
3.4
|
21.9
|
1.0
|
CA
|
C:VAL55
|
3.7
|
17.8
|
1.0
|
CA
|
D:GLY31
|
3.8
|
17.5
|
1.0
|
C3P
|
C:COA201
|
3.8
|
14.0
|
1.0
|
OG1
|
C:THR56
|
3.8
|
17.8
|
1.0
|
N4P
|
C:COA201
|
3.8
|
15.0
|
1.0
|
CB
|
C:VAL55
|
4.0
|
17.7
|
1.0
|
C
|
C:VAL55
|
4.0
|
16.2
|
1.0
|
CB
|
C:THR56
|
4.0
|
16.9
|
1.0
|
CA
|
C:THR56
|
4.2
|
15.8
|
1.0
|
ND1
|
D:HIS30
|
4.2
|
18.6
|
1.0
|
C
|
D:HIS30
|
4.3
|
18.5
|
1.0
|
CA
|
D:HIS30
|
4.4
|
16.8
|
1.0
|
CG1
|
C:VAL55
|
4.4
|
19.0
|
1.0
|
C5P
|
C:COA201
|
4.5
|
16.0
|
1.0
|
O
|
D:VAL29
|
4.5
|
18.4
|
1.0
|
CG
|
D:ASN24
|
4.6
|
21.4
|
1.0
|
O
|
C:CYS54
|
4.7
|
22.1
|
1.0
|
CE1
|
C:TYR43
|
4.7
|
23.2
|
1.0
|
CD1
|
C:TYR43
|
4.7
|
23.1
|
1.0
|
O
|
C:THR56
|
4.8
|
16.7
|
1.0
|
CE1
|
D:HIS30
|
4.8
|
21.0
|
1.0
|
O5P
|
C:COA201
|
4.8
|
15.1
|
1.0
|
N
|
C:VAL55
|
4.9
|
17.1
|
1.0
|
C
|
C:THR56
|
5.0
|
16.4
|
1.0
|
|
Reference:
Y.B.Khandokar,
A.Londhe,
S.Patil,
J.K.Forwood.
Expression, Purification and Crystallization of Acetyl-Coa Hydrolase From Neisseria Meningitidis. Acta Crystallogr.,Sect.F V. 69 1303 2013.
ISSN: ESSN 1744-3091
PubMed: 24192375
DOI: 10.1107/S1744309113028042
Page generated: Sun Jul 21 16:36:37 2024
|