Atomistry » Chlorine » PDB 4ibe-4iii » 4ig6
Atomistry »
  Chlorine »
    PDB 4ibe-4iii »
      4ig6 »

Chlorine in PDB 4ig6: Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine

Enzymatic activity of Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine

All present enzymatic activity of Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine:
2.1.1.228;

Protein crystallography data

The structure of Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine, PDB code: 4ig6 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.92 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.110, 105.110, 92.250, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine (pdb code 4ig6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine, PDB code: 4ig6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4ig6

Go back to Chlorine Binding Sites List in 4ig6
Chlorine binding site 1 out of 2 in the Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:50.9
occ:1.00
O A:HOH470 2.7 52.2 1.0
N A:GLN11 3.0 28.4 1.0
CB A:GLN11 3.3 34.9 1.0
C A:PHE9 3.3 23.3 1.0
CA A:PHE9 3.3 23.3 1.0
N A:PRO10 3.4 24.3 1.0
CD A:PRO10 3.4 25.1 1.0
CG A:GLN11 3.6 42.0 1.0
CA A:GLN11 3.7 30.5 1.0
OE1 A:GLN11 3.8 55.3 1.0
CG A:PRO10 3.8 25.2 1.0
O A:PHE9 4.0 22.1 1.0
CB A:PHE9 4.0 24.5 1.0
CD A:GLN11 4.0 49.2 1.0
C A:PRO10 4.1 26.3 1.0
NH2 A:ARG39 4.1 25.2 0.5
CD1 A:PHE9 4.2 25.7 1.0
CA A:PRO10 4.2 25.3 1.0
O A:ILE8 4.3 23.3 1.0
C A:GLN11 4.5 28.3 1.0
N A:MET12 4.5 26.8 1.0
N A:PHE9 4.5 22.9 1.0
CG A:PHE9 4.6 25.0 1.0
CB A:PRO10 4.7 25.0 1.0
CZ A:ARG39 4.7 25.6 0.5
C A:ILE8 4.8 23.1 1.0
NH1 A:ARG39 5.0 26.8 0.5

Chlorine binding site 2 out of 2 in 4ig6

Go back to Chlorine Binding Sites List in 4ig6
Chlorine binding site 2 out of 2 in the Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:45.2
occ:1.00
O A:HOH491 3.1 45.1 1.0
O A:HOH490 3.2 35.8 1.0
N A:ASN80 3.2 35.5 1.0
C A:HIS78 3.4 35.8 1.0
CA A:HIS78 3.6 35.0 1.0
N A:THR81 3.7 30.5 1.0
CB A:ASN80 3.7 37.7 1.0
CA A:ASN80 3.7 35.5 1.0
N A:PRO79 3.7 35.9 1.0
CB A:HIS78 3.7 34.3 1.0
C A:ASN80 3.7 33.1 1.0
O A:HIS78 3.8 35.8 1.0
CD A:PRO79 4.0 36.7 1.0
ND2 A:ASN106 4.1 38.2 1.0
CG A:ASN106 4.2 35.2 1.0
CB A:ASN106 4.2 34.6 1.0
C A:PRO79 4.3 35.1 1.0
O A:HOH492 4.3 49.8 1.0
O A:ASN80 4.4 33.3 1.0
CA A:THR81 4.5 29.8 1.0
ND2 A:ASN80 4.5 40.3 1.0
CA A:PRO79 4.6 35.6 1.0
CG A:ASN80 4.6 40.1 1.0
CG A:HIS78 4.7 37.0 1.0
OD1 A:ASN106 4.8 34.7 1.0
ND1 A:HIS78 4.8 38.3 1.0
CG A:PRO79 4.8 36.9 1.0
CB A:THR81 4.9 29.0 1.0
N A:HIS78 5.0 34.8 1.0

Reference:

T.E.Edwards, M.C.Clifton, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound to S-Adenosylhomocysteine To Be Published.
Page generated: Sat Dec 12 10:45:29 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy