Chlorine in PDB 4igu: Crystal Structure of the Rgs Domain of CG5036
Protein crystallography data
The structure of Crystal Structure of the Rgs Domain of CG5036, PDB code: 4igu
was solved by
A.Gabdulkhakov,
S.Tishchenko,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.05 /
1.90
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.393,
65.980,
141.701,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.4 /
23.2
|
Other elements in 4igu:
The structure of Crystal Structure of the Rgs Domain of CG5036 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the Rgs Domain of CG5036
(pdb code 4igu). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of the Rgs Domain of CG5036, PDB code: 4igu:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4igu
Go back to
Chlorine Binding Sites List in 4igu
Chlorine binding site 1 out
of 5 in the Crystal Structure of the Rgs Domain of CG5036
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Rgs Domain of CG5036 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:34.5
occ:1.00
|
NE2
|
A:HIS124
|
2.9
|
21.9
|
1.0
|
O
|
A:HOH310
|
3.3
|
18.0
|
1.0
|
N
|
A:PHE26
|
3.4
|
17.1
|
1.0
|
CE1
|
A:HIS124
|
3.8
|
28.3
|
1.0
|
CA
|
A:SER25
|
3.8
|
20.7
|
1.0
|
CD2
|
A:HIS124
|
4.0
|
25.4
|
1.0
|
CB
|
A:PHE26
|
4.0
|
19.6
|
1.0
|
CB
|
A:SER25
|
4.0
|
17.2
|
1.0
|
C
|
A:SER25
|
4.1
|
16.8
|
1.0
|
CE2
|
A:TYR128
|
4.3
|
19.8
|
1.0
|
CA
|
A:PHE26
|
4.3
|
18.4
|
1.0
|
CG2
|
B:THR108
|
4.6
|
20.6
|
1.0
|
O
|
A:LYS24
|
4.9
|
24.8
|
1.0
|
ND1
|
A:HIS124
|
4.9
|
25.8
|
1.0
|
CD2
|
A:TYR128
|
4.9
|
19.7
|
1.0
|
OH
|
A:TYR128
|
5.0
|
22.5
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4igu
Go back to
Chlorine Binding Sites List in 4igu
Chlorine binding site 2 out
of 5 in the Crystal Structure of the Rgs Domain of CG5036
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Rgs Domain of CG5036 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:39.8
occ:1.00
|
NE1
|
A:TRP55
|
3.0
|
12.9
|
1.0
|
O
|
B:HOH386
|
3.1
|
24.8
|
1.0
|
CB
|
A:TYR120
|
3.8
|
11.9
|
1.0
|
CE1
|
B:HIS110
|
3.9
|
21.4
|
0.5
|
CG
|
A:GLN116
|
3.9
|
11.4
|
1.0
|
CE2
|
A:TRP55
|
3.9
|
13.8
|
1.0
|
OD2
|
B:ASP113
|
3.9
|
19.1
|
1.0
|
CG
|
A:TYR120
|
3.9
|
16.3
|
1.0
|
ND1
|
B:HIS110
|
3.9
|
20.2
|
1.0
|
CD1
|
A:TRP55
|
4.0
|
14.3
|
1.0
|
CD
|
A:GLN116
|
4.0
|
17.4
|
1.0
|
CD2
|
A:TYR120
|
4.0
|
17.0
|
1.0
|
CZ2
|
A:TRP55
|
4.2
|
16.3
|
1.0
|
NE2
|
A:GLN116
|
4.2
|
13.6
|
1.0
|
O
|
A:HOH371
|
4.2
|
27.4
|
1.0
|
O
|
A:GLN116
|
4.3
|
12.3
|
1.0
|
OE1
|
A:GLN116
|
4.4
|
16.9
|
1.0
|
CA
|
A:ILE117
|
4.5
|
17.1
|
1.0
|
C
|
A:GLN116
|
4.5
|
14.4
|
1.0
|
N
|
A:ILE117
|
4.6
|
12.5
|
1.0
|
CD1
|
A:TYR120
|
4.6
|
17.3
|
1.0
|
CG1
|
A:ILE117
|
4.7
|
21.8
|
1.0
|
CE2
|
A:TYR120
|
4.8
|
16.4
|
1.0
|
CB
|
A:GLN116
|
4.9
|
15.3
|
1.0
|
NE2
|
B:HIS110
|
4.9
|
23.3
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4igu
Go back to
Chlorine Binding Sites List in 4igu
Chlorine binding site 3 out
of 5 in the Crystal Structure of the Rgs Domain of CG5036
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Rgs Domain of CG5036 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:30.7
occ:1.00
|
O
|
A:HOH362
|
2.8
|
37.4
|
1.0
|
ND2
|
A:ASN101
|
3.2
|
16.2
|
1.0
|
NH1
|
A:ARG97
|
3.7
|
22.5
|
1.0
|
OH
|
A:TYR78
|
4.2
|
11.3
|
1.0
|
CG
|
A:ASN101
|
4.2
|
16.4
|
1.0
|
OD1
|
A:ASN101
|
4.4
|
14.5
|
1.0
|
CD
|
A:ARG97
|
4.4
|
25.6
|
1.0
|
CB
|
A:ARG97
|
4.5
|
16.6
|
1.0
|
OE2
|
A:GLU98
|
4.5
|
44.7
|
1.0
|
CZ
|
A:ARG97
|
4.8
|
27.5
|
1.0
|
CG
|
A:ARG97
|
4.9
|
20.9
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4igu
Go back to
Chlorine Binding Sites List in 4igu
Chlorine binding site 4 out
of 5 in the Crystal Structure of the Rgs Domain of CG5036
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Rgs Domain of CG5036 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:26.0
occ:1.00
|
O
|
B:HOH389
|
2.8
|
26.7
|
1.0
|
NE1
|
B:TRP55
|
3.0
|
11.5
|
1.0
|
O
|
A:HOH319
|
3.1
|
19.7
|
1.0
|
CE1
|
A:HIS110
|
3.7
|
16.6
|
0.5
|
CB
|
B:TYR120
|
3.8
|
10.6
|
1.0
|
CG
|
B:GLN116
|
3.8
|
14.9
|
1.0
|
CD2
|
B:TYR120
|
3.9
|
10.6
|
1.0
|
CD1
|
B:TRP55
|
3.9
|
10.4
|
1.0
|
CG
|
B:TYR120
|
4.0
|
9.1
|
1.0
|
CD
|
B:GLN116
|
4.0
|
14.4
|
1.0
|
CE2
|
B:TRP55
|
4.0
|
13.2
|
1.0
|
ND1
|
A:HIS110
|
4.1
|
21.2
|
1.0
|
NE2
|
B:GLN116
|
4.1
|
13.2
|
1.0
|
O
|
B:GLN116
|
4.2
|
9.5
|
1.0
|
CG2
|
B:ILE117
|
4.3
|
21.6
|
1.0
|
OD2
|
A:ASP113
|
4.3
|
18.4
|
1.0
|
CZ2
|
B:TRP55
|
4.3
|
13.1
|
1.0
|
CA
|
B:ILE117
|
4.3
|
11.7
|
1.0
|
C
|
B:GLN116
|
4.4
|
10.4
|
1.0
|
OE1
|
B:GLN116
|
4.5
|
18.1
|
1.0
|
N
|
B:ILE117
|
4.5
|
11.4
|
1.0
|
NE2
|
A:HIS110
|
4.7
|
15.8
|
1.0
|
CB
|
B:GLN116
|
4.7
|
10.8
|
1.0
|
CE2
|
B:TYR120
|
4.8
|
11.7
|
1.0
|
CB
|
B:ILE117
|
4.8
|
14.8
|
1.0
|
CD1
|
B:TYR120
|
4.8
|
10.0
|
1.0
|
OE2
|
B:GLU59
|
5.0
|
19.3
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4igu
Go back to
Chlorine Binding Sites List in 4igu
Chlorine binding site 5 out
of 5 in the Crystal Structure of the Rgs Domain of CG5036
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Rgs Domain of CG5036 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl202
b:30.1
occ:1.00
|
O
|
B:HOH311
|
2.7
|
15.9
|
1.0
|
O
|
A:HOH304
|
2.9
|
13.1
|
1.0
|
N
|
B:ASP27
|
3.4
|
7.8
|
1.0
|
CB
|
B:ASP27
|
3.4
|
9.9
|
1.0
|
OG
|
B:SER25
|
3.7
|
11.7
|
1.0
|
O
|
B:HOH313
|
3.7
|
12.9
|
1.0
|
CB
|
A:THR108
|
4.0
|
12.1
|
1.0
|
CA
|
B:ASP27
|
4.0
|
7.4
|
1.0
|
CG2
|
A:THR108
|
4.0
|
11.4
|
1.0
|
N
|
B:PHE26
|
4.0
|
12.8
|
1.0
|
CE1
|
B:HIS124
|
4.2
|
15.8
|
1.0
|
C
|
B:PHE26
|
4.4
|
8.7
|
1.0
|
O
|
A:HOH315
|
4.4
|
16.4
|
1.0
|
O
|
A:HOH330
|
4.4
|
15.8
|
1.0
|
CB
|
B:PHE26
|
4.5
|
11.0
|
1.0
|
NE2
|
B:HIS124
|
4.5
|
13.9
|
1.0
|
CA
|
B:PHE26
|
4.5
|
8.3
|
1.0
|
O
|
A:HOH329
|
4.7
|
26.3
|
1.0
|
CG
|
B:ASP27
|
4.7
|
12.9
|
1.0
|
C
|
B:SER25
|
4.7
|
10.8
|
1.0
|
CB
|
B:SER25
|
4.7
|
14.1
|
1.0
|
NA
|
A:NA204
|
4.8
|
25.7
|
1.0
|
CA
|
B:SER25
|
4.8
|
15.5
|
1.0
|
CA
|
A:THR108
|
4.9
|
11.8
|
1.0
|
OG1
|
A:THR108
|
4.9
|
11.4
|
1.0
|
OG1
|
A:THR109
|
5.0
|
12.6
|
1.0
|
OH
|
B:TYR120
|
5.0
|
14.2
|
1.0
|
|
Reference:
C.Lin,
A.Koval,
S.Tishchenko,
A.Gabdulkhakov,
U.Tin,
G.P.Solis,
V.L.Katanaev.
Double Suppression of the G Alpha Protein Activity By Rgs Proteins Mol.Cell V. 53 663 2014.
ISSN: ISSN 1097-2765
PubMed: 24560274
DOI: 10.1016/J.MOLCEL.2014.01.014
Page generated: Sun Jul 21 16:38:23 2024
|