Atomistry » Chlorine » PDB 4iij-4io2 » 4ilc
Atomistry »
  Chlorine »
    PDB 4iij-4io2 »
      4ilc »

Chlorine in PDB 4ilc: The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates

Protein crystallography data

The structure of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates, PDB code: 4ilc was solved by L.Sauguet, L.Malherbe, P.J.Corringer, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.53 / 2.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 182.328, 132.100, 161.137, 90.00, 103.02, 90.00
R / Rfree (%) 21.5 / 23.6

Other elements in 4ilc:

The structure of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates (pdb code 4ilc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates, PDB code: 4ilc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4ilc

Go back to Chlorine Binding Sites List in 4ilc
Chlorine binding site 1 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:51.8
occ:1.00
 N A:PHE78 3.3 52.0 1.0
N A:ARG85 3.4 53.4 1.0
NH1 A:ARG85 3.5 47.6 1.0
CD2 A:PHE78 3.6 58.0 1.0
CB A:PHE78 3.8 52.8 1.0
CA A:ALA84 3.9 52.0 1.0
CA A:ARG77 4.0 48.1 1.0
CG A:ARG85 4.0 51.3 1.0
CB A:ARG85 4.0 50.1 1.0
CA A:PHE78 4.1 51.0 1.0
C A:ARG77 4.1 54.9 1.0
CG2 A:VAL81 4.1 53.2 1.0
CG A:PHE78 4.2 55.1 1.0
C A:ALA84 4.2 58.8 1.0
CD A:ARG85 4.2 51.0 1.0
O A:PHE78 4.3 54.8 1.0
CB A:ARG77 4.3 44.1 1.0
CA A:ARG85 4.4 52.4 1.0
CB A:ALA84 4.4 52.7 1.0
CZ A:ARG85 4.6 57.6 1.0
CE2 A:PHE78 4.7 61.0 1.0
CG A:ARG77 4.7 46.8 1.0
C A:PHE78 4.7 54.0 1.0
NE A:ARG85 4.8 50.5 1.0

Chlorine binding site 2 out of 5 in 4ilc

Go back to Chlorine Binding Sites List in 4ilc
Chlorine binding site 2 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:59.9
occ:1.00
 N B:PHE78 3.2 54.4 1.0
NH1 B:ARG85 3.4 56.5 1.0
N B:ARG85 3.5 54.5 1.0
CD2 B:PHE78 3.5 60.9 1.0
CB B:PHE78 3.8 55.8 1.0
CG B:ARG85 3.9 51.2 1.0
CA B:ARG77 4.0 52.1 1.0
CB B:ARG85 4.0 50.2 1.0
CA B:PHE78 4.0 54.0 1.0
C B:ARG77 4.1 57.6 1.0
CA B:ALA84 4.1 55.7 1.0
CG B:PHE78 4.1 58.0 1.0
CD B:ARG85 4.1 58.0 1.0
CG2 B:VAL81 4.2 53.6 1.0
C B:ALA84 4.3 60.7 1.0
CB B:ARG77 4.3 49.0 1.0
O B:PHE78 4.3 59.2 1.0
CA B:ARG85 4.4 53.6 1.0
CZ B:ARG85 4.5 64.1 1.0
CE2 B:PHE78 4.5 63.4 1.0
CB B:ALA84 4.6 56.0 1.0
CG B:ARG77 4.7 60.3 1.0
C B:PHE78 4.7 58.5 1.0
NE B:ARG85 4.7 53.9 1.0
O B:ILE76 5.0 61.5 1.0

Chlorine binding site 3 out of 5 in 4ilc

Go back to Chlorine Binding Sites List in 4ilc
Chlorine binding site 3 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl406

b:54.0
occ:1.00
 N C:PHE78 3.3 53.2 1.0
NH1 C:ARG85 3.4 57.7 1.0
N C:ARG85 3.4 57.2 1.0
CD2 C:PHE78 3.5 60.0 1.0
CB C:PHE78 3.8 54.0 1.0
CG C:ARG85 3.8 53.2 1.0
CB C:ARG85 3.9 54.2 1.0
CA C:ALA84 4.0 54.3 1.0
CA C:ARG77 4.0 50.4 1.0
CD C:ARG85 4.0 56.7 1.0
CG C:PHE78 4.1 56.6 1.0
CA C:PHE78 4.1 52.1 1.0
C C:ARG77 4.1 56.3 1.0
CG2 C:VAL81 4.2 57.4 1.0
C C:ALA84 4.2 61.0 1.0
CA C:ARG85 4.3 56.6 1.0
O C:PHE78 4.4 56.6 1.0
CB C:ARG77 4.4 41.5 1.0
CZ C:ARG85 4.4 68.6 1.0
CE2 C:PHE78 4.5 62.8 1.0
CB C:ALA84 4.5 54.9 1.0
NE C:ARG85 4.7 54.2 1.0
C C:PHE78 4.8 55.5 1.0
CG C:ARG77 4.8 53.4 1.0
O C:ILE76 5.0 60.8 1.0

Chlorine binding site 4 out of 5 in 4ilc

Go back to Chlorine Binding Sites List in 4ilc
Chlorine binding site 4 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl406

b:58.0
occ:1.00
 N D:PHE78 3.3 55.0 1.0
NH1 D:ARG85 3.3 44.8 1.0
N D:ARG85 3.5 51.7 1.0
CD2 D:PHE78 3.5 60.2 1.0
CB D:PHE78 3.8 56.5 1.0
CG D:ARG85 3.9 55.3 1.0
CA D:ARG77 3.9 52.9 1.0
CB D:ARG85 4.0 50.9 1.0
CD D:ARG85 4.0 60.1 1.0
C D:ARG77 4.0 58.5 1.0
CA D:ALA84 4.1 51.8 1.0
CA D:PHE78 4.1 54.6 1.0
CG D:PHE78 4.1 58.3 1.0
C D:ALA84 4.3 57.3 1.0
CB D:ARG77 4.3 51.0 1.0
CG2 D:VAL81 4.3 49.3 1.0
CA D:ARG85 4.4 51.2 1.0
CZ D:ARG85 4.4 66.5 1.0
O D:PHE78 4.4 59.2 1.0
CE2 D:PHE78 4.5 62.1 1.0
CB D:ALA84 4.6 52.0 1.0
NE D:ARG85 4.7 61.6 1.0
CG D:ARG77 4.7 51.9 1.0
C D:PHE78 4.8 58.4 1.0
O D:ILE76 4.9 59.7 1.0

Chlorine binding site 5 out of 5 in 4ilc

Go back to Chlorine Binding Sites List in 4ilc
Chlorine binding site 5 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Glic Pentameric Ligand-Gated Ion Channel in Complex with Sulfates within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl406

b:61.0
occ:1.00
 N E:PHE78 3.2 52.7 1.0
NH1 E:ARG85 3.4 51.5 1.0
CD2 E:PHE78 3.5 62.7 1.0
N E:ARG85 3.5 58.9 1.0
CB E:PHE78 3.7 56.6 1.0
CA E:ARG77 3.9 51.9 1.0
CG E:ARG85 4.0 56.8 1.0
C E:ARG77 4.0 55.7 1.0
CA E:PHE78 4.0 53.5 1.0
CG E:PHE78 4.0 59.5 1.0
CB E:ARG85 4.1 57.1 1.0
CA E:ALA84 4.1 54.5 1.0
CD E:ARG85 4.1 59.7 1.0
CG2 E:VAL81 4.2 60.0 1.0
CB E:ARG77 4.3 47.7 1.0
O E:PHE78 4.3 58.9 1.0
C E:ALA84 4.3 62.4 1.0
CA E:ARG85 4.4 58.3 1.0
CZ E:ARG85 4.5 68.3 1.0
CE2 E:PHE78 4.5 65.7 1.0
CB E:ALA84 4.6 55.0 1.0
C E:PHE78 4.7 56.8 1.0
CG E:ARG77 4.7 56.3 1.0
NE E:ARG85 4.7 59.7 1.0
O E:ILE76 4.9 62.1 1.0

Reference:

L.Sauguet, F.Poitevin, S.Murail, C.Van Renterghem, G.Moraga-Cid, L.Malherbe, A.W.Thompson, P.Koehl, P.J.Corringer, M.Baaden, M.Delarue. Structural Basis For Ion Permeation Mechanism in Pentameric Ligand-Gated Ion Channels. Embo J. V. 32 728 2013.
ISSN: ISSN 0261-4189
PubMed: 23403925
DOI: 10.1038/EMBOJ.2013.17
Page generated: Sun Jul 21 16:51:36 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy