Chlorine in PDB 4io6: Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Protein crystallography data
The structure of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution, PDB code: 4io6
was solved by
S.Lomash,
S.Chittori,
M.L.Mayer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.51 /
1.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.997,
100.537,
56.725,
90.00,
116.21,
90.00
|
R / Rfree (%)
|
15 /
17.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
(pdb code 4io6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution, PDB code: 4io6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 1 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:27.3
occ:0.83
|
HH22
|
A:ARG93
|
2.5
|
21.1
|
1.0
|
HH12
|
A:ARG93
|
2.5
|
19.3
|
1.0
|
O
|
A:HOH478
|
2.7
|
41.8
|
1.0
|
O
|
A:HOH445
|
2.8
|
27.4
|
1.0
|
HB3
|
A:LYS213
|
2.8
|
21.7
|
1.0
|
HB2
|
B:LYS219
|
3.0
|
24.8
|
1.0
|
H
|
A:GLU214
|
3.1
|
23.8
|
1.0
|
HG2
|
A:LYS213
|
3.1
|
24.9
|
1.0
|
HD2
|
A:LYS213
|
3.2
|
24.9
|
1.0
|
NH2
|
A:ARG93
|
3.2
|
17.6
|
1.0
|
NH1
|
A:ARG93
|
3.3
|
16.1
|
1.0
|
HG3
|
A:GLU214
|
3.3
|
34.5
|
1.0
|
HA
|
A:LYS213
|
3.4
|
23.1
|
1.0
|
CB
|
A:LYS213
|
3.5
|
18.1
|
1.0
|
CG
|
A:LYS213
|
3.6
|
20.7
|
1.0
|
CZ
|
A:ARG93
|
3.7
|
13.1
|
1.0
|
N
|
A:GLU214
|
3.8
|
19.8
|
1.0
|
HB2
|
A:ALA97
|
3.8
|
18.0
|
1.0
|
CD
|
A:LYS213
|
3.8
|
20.8
|
1.0
|
CA
|
A:LYS213
|
3.9
|
19.3
|
1.0
|
HH21
|
A:ARG93
|
3.9
|
21.1
|
1.0
|
CB
|
B:LYS219
|
3.9
|
20.6
|
1.0
|
HH11
|
A:ARG93
|
4.0
|
19.3
|
1.0
|
O
|
B:HOH417
|
4.0
|
25.2
|
1.0
|
CG
|
A:GLU214
|
4.2
|
28.8
|
1.0
|
HD3
|
B:LYS219
|
4.2
|
33.9
|
1.0
|
HD3
|
A:LYS213
|
4.3
|
24.9
|
1.0
|
C
|
A:LYS213
|
4.3
|
20.9
|
1.0
|
H
|
B:LYS219
|
4.3
|
16.9
|
1.0
|
HB3
|
B:ALA218
|
4.3
|
20.4
|
1.0
|
HB2
|
A:LYS213
|
4.3
|
21.7
|
1.0
|
HG2
|
A:GLU214
|
4.3
|
34.5
|
1.0
|
HB3
|
B:LYS219
|
4.4
|
24.8
|
1.0
|
HG3
|
B:LYS219
|
4.4
|
26.7
|
1.0
|
HA
|
B:LYS219
|
4.4
|
19.8
|
1.0
|
HG3
|
A:LYS213
|
4.5
|
24.9
|
1.0
|
CA
|
B:LYS219
|
4.6
|
16.5
|
1.0
|
N
|
B:LYS219
|
4.6
|
14.1
|
1.0
|
CG
|
B:LYS219
|
4.7
|
22.2
|
1.0
|
HA
|
A:GLU214
|
4.7
|
27.8
|
1.0
|
CB
|
A:ALA97
|
4.8
|
15.0
|
1.0
|
CA
|
A:GLU214
|
4.8
|
23.1
|
1.0
|
OE2
|
A:GLU214
|
4.8
|
43.2
|
1.0
|
O
|
B:HOH620
|
4.9
|
39.0
|
1.0
|
O
|
B:HOH493
|
4.9
|
37.3
|
1.0
|
CD
|
B:LYS219
|
5.0
|
28.2
|
1.0
|
HB1
|
A:ALA97
|
5.0
|
18.0
|
1.0
|
NE
|
A:ARG93
|
5.0
|
13.5
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 2 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:28.1
occ:0.60
|
HG1
|
B:THR206
|
2.2
|
23.9
|
1.0
|
HD21
|
A:ASN100
|
2.7
|
45.2
|
0.5
|
HH22
|
A:ARG229
|
2.7
|
37.7
|
0.7
|
H
|
A:SER101
|
2.8
|
18.3
|
0.4
|
H
|
A:SER101
|
2.8
|
18.3
|
0.6
|
OG1
|
B:THR206
|
3.0
|
19.9
|
1.0
|
OD1
|
A:ASN100
|
3.0
|
22.1
|
0.5
|
HG
|
A:SER101
|
3.2
|
20.4
|
0.4
|
HH12
|
A:ARG229
|
3.2
|
20.8
|
0.7
|
HB3
|
A:SER101
|
3.2
|
23.7
|
0.6
|
O
|
A:HOH479
|
3.3
|
36.7
|
1.0
|
HB3
|
B:SER101
|
3.3
|
20.7
|
0.2
|
HG21
|
B:THR206
|
3.3
|
21.8
|
1.0
|
HD22
|
A:ASN100
|
3.4
|
27.4
|
0.5
|
CG
|
A:ASN100
|
3.4
|
19.7
|
0.5
|
OG
|
A:SER101
|
3.5
|
17.0
|
0.4
|
HB3
|
A:ASN100
|
3.5
|
23.9
|
0.5
|
ND2
|
A:ASN100
|
3.5
|
37.6
|
0.5
|
HB2
|
B:SER101
|
3.5
|
17.5
|
0.8
|
HG21
|
B:VAL88
|
3.6
|
17.5
|
1.0
|
NH2
|
A:ARG229
|
3.6
|
31.4
|
0.7
|
HA
|
A:ASN100
|
3.6
|
19.6
|
0.5
|
N
|
A:SER101
|
3.6
|
15.3
|
1.0
|
ND2
|
A:ASN100
|
3.6
|
22.9
|
0.5
|
HA
|
A:ASN100
|
3.6
|
17.6
|
0.5
|
HG11
|
B:VAL88
|
3.8
|
18.0
|
1.0
|
CB
|
B:THR206
|
3.9
|
17.6
|
1.0
|
NH1
|
A:ARG229
|
3.9
|
17.4
|
0.7
|
CB
|
A:SER101
|
3.9
|
19.8
|
0.6
|
HB
|
B:THR206
|
3.9
|
21.2
|
1.0
|
HB2
|
A:SER101
|
3.9
|
23.7
|
0.6
|
CG2
|
B:THR206
|
4.0
|
18.1
|
1.0
|
HD22
|
A:ASN100
|
4.0
|
45.2
|
0.5
|
CB
|
A:ASN100
|
4.1
|
19.9
|
0.5
|
HB3
|
A:SER101
|
4.1
|
20.5
|
0.4
|
HH21
|
A:ARG229
|
4.1
|
37.7
|
0.7
|
CA
|
A:ASN100
|
4.2
|
14.7
|
0.5
|
HD21
|
A:ASN100
|
4.2
|
27.4
|
0.5
|
CB
|
A:SER101
|
4.2
|
17.1
|
0.4
|
HG23
|
B:THR206
|
4.2
|
21.8
|
1.0
|
CB
|
B:SER101
|
4.2
|
17.2
|
0.2
|
HB
|
B:VAL88
|
4.2
|
12.5
|
1.0
|
CZ
|
A:ARG229
|
4.2
|
24.6
|
0.7
|
CA
|
A:ASN100
|
4.2
|
16.4
|
0.5
|
CG
|
A:ASN100
|
4.3
|
24.9
|
0.5
|
C
|
A:ASN100
|
4.4
|
13.4
|
1.0
|
CA
|
A:SER101
|
4.4
|
16.1
|
0.6
|
H
|
B:SER101
|
4.4
|
19.5
|
0.8
|
CG2
|
B:VAL88
|
4.4
|
14.6
|
1.0
|
CB
|
A:ASN100
|
4.4
|
17.3
|
0.5
|
H
|
B:SER101
|
4.4
|
19.5
|
0.2
|
CA
|
A:SER101
|
4.5
|
17.5
|
0.4
|
CB
|
B:SER101
|
4.5
|
14.6
|
0.8
|
OG
|
B:SER101
|
4.6
|
11.6
|
0.2
|
HD21
|
A:LEU226
|
4.6
|
21.0
|
1.0
|
CG1
|
B:VAL88
|
4.6
|
15.0
|
1.0
|
HH11
|
A:ARG229
|
4.6
|
20.8
|
0.7
|
CB
|
B:VAL88
|
4.7
|
10.4
|
1.0
|
HG23
|
B:VAL88
|
4.8
|
17.5
|
1.0
|
HB2
|
B:SER101
|
4.8
|
20.7
|
0.2
|
HG22
|
B:THR206
|
4.8
|
21.8
|
1.0
|
HA
|
B:SER101
|
4.8
|
18.2
|
0.8
|
CL
|
B:CL303
|
4.8
|
23.1
|
0.8
|
N
|
B:SER101
|
4.9
|
16.2
|
1.0
|
HB3
|
B:SER101
|
4.9
|
17.5
|
0.8
|
HB2
|
A:ASN100
|
4.9
|
20.8
|
0.5
|
HB2
|
A:ASN100
|
5.0
|
23.9
|
0.5
|
|
Chlorine binding site 3 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 3 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:14.4
occ:0.84
|
HH22
|
A:ARG136
|
2.3
|
26.2
|
1.0
|
HH21
|
A:ARG162
|
2.4
|
20.7
|
1.0
|
H
|
A:ASP180
|
2.4
|
15.3
|
1.0
|
HE
|
A:ARG162
|
2.5
|
18.5
|
1.0
|
HG1
|
A:THR183
|
2.7
|
18.8
|
1.0
|
HH12
|
A:ARG136
|
2.8
|
19.9
|
1.0
|
HA
|
A:MET179
|
3.0
|
16.5
|
1.0
|
NH2
|
A:ARG136
|
3.1
|
21.8
|
1.0
|
HB3
|
A:MET179
|
3.2
|
19.5
|
1.0
|
NH2
|
A:ARG162
|
3.2
|
17.2
|
1.0
|
N
|
A:ASP180
|
3.2
|
12.8
|
1.0
|
HG3
|
A:MET301
|
3.2
|
20.1
|
1.0
|
HG2
|
A:MET179
|
3.3
|
19.1
|
1.0
|
NE
|
A:ARG162
|
3.3
|
15.4
|
1.0
|
OG1
|
A:THR183
|
3.3
|
15.7
|
1.0
|
HE3
|
A:MET179
|
3.3
|
18.8
|
1.0
|
HE2
|
A:MET179
|
3.4
|
18.8
|
1.0
|
HG2
|
A:MET301
|
3.4
|
20.1
|
1.0
|
HB2
|
A:ASP180
|
3.5
|
14.8
|
1.0
|
NH1
|
A:ARG136
|
3.5
|
16.6
|
1.0
|
HE3
|
A:MET301
|
3.6
|
27.6
|
1.0
|
CA
|
A:MET179
|
3.6
|
13.8
|
1.0
|
CB
|
A:MET179
|
3.7
|
16.2
|
1.0
|
CZ
|
A:ARG162
|
3.7
|
15.5
|
1.0
|
HH21
|
A:ARG136
|
3.7
|
26.2
|
1.0
|
CZ
|
A:ARG136
|
3.7
|
22.0
|
1.0
|
O
|
A:HOH404
|
3.8
|
13.9
|
1.0
|
CG
|
A:MET301
|
3.8
|
16.8
|
1.0
|
CE
|
A:MET179
|
3.8
|
15.7
|
1.0
|
HH22
|
A:ARG162
|
3.9
|
20.7
|
1.0
|
CG
|
A:MET179
|
3.9
|
15.9
|
1.0
|
C
|
A:MET179
|
3.9
|
12.9
|
1.0
|
OD2
|
A:ASP180
|
4.1
|
13.4
|
1.0
|
CB
|
A:ASP180
|
4.1
|
12.3
|
1.0
|
HE2
|
A:MET301
|
4.2
|
27.6
|
1.0
|
CG
|
A:ASP180
|
4.2
|
13.6
|
1.0
|
CA
|
A:ASP180
|
4.2
|
11.9
|
1.0
|
HH11
|
A:ARG136
|
4.2
|
19.9
|
1.0
|
CE
|
A:MET301
|
4.3
|
23.0
|
1.0
|
HD3
|
A:ARG162
|
4.4
|
19.0
|
1.0
|
CD
|
A:ARG162
|
4.4
|
15.8
|
1.0
|
CB
|
A:THR183
|
4.5
|
14.7
|
1.0
|
HB
|
A:THR183
|
4.5
|
17.7
|
1.0
|
HG2
|
A:ARG162
|
4.6
|
20.9
|
1.0
|
HE1
|
A:MET179
|
4.6
|
18.8
|
1.0
|
O
|
A:ASP180
|
4.6
|
12.9
|
1.0
|
HB2
|
A:MET179
|
4.6
|
19.5
|
1.0
|
HE1
|
A:MET165
|
4.7
|
26.0
|
1.0
|
HG3
|
A:MET179
|
4.7
|
19.1
|
1.0
|
SD
|
A:MET179
|
4.7
|
18.0
|
1.0
|
HB2
|
A:MET301
|
4.8
|
18.5
|
1.0
|
SD
|
A:MET301
|
4.9
|
18.5
|
1.0
|
HG21
|
A:THR183
|
4.9
|
18.6
|
1.0
|
O
|
A:PHE178
|
4.9
|
16.9
|
1.0
|
C
|
A:ASP180
|
4.9
|
13.9
|
1.0
|
N
|
A:MET179
|
5.0
|
13.9
|
1.0
|
OD1
|
A:ASP180
|
5.0
|
15.3
|
1.0
|
HB3
|
A:ASP180
|
5.0
|
14.8
|
1.0
|
CB
|
A:MET301
|
5.0
|
15.4
|
1.0
|
HA
|
A:ASP180
|
5.0
|
14.3
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 4 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl305
b:40.4
occ:0.90
|
H
|
A:MET120
|
2.4
|
38.9
|
1.0
|
H
|
A:GLU200
|
2.5
|
32.9
|
1.0
|
HA3
|
A:GLY119
|
2.8
|
42.5
|
1.0
|
HB2
|
A:GLU200
|
3.1
|
36.1
|
1.0
|
O
|
A:HOH498
|
3.1
|
33.3
|
1.0
|
N
|
A:MET120
|
3.2
|
32.4
|
1.0
|
N
|
A:GLU200
|
3.3
|
27.4
|
1.0
|
HA3
|
A:GLY199
|
3.5
|
33.2
|
1.0
|
CA
|
A:GLY119
|
3.5
|
35.4
|
1.0
|
HA2
|
A:GLY119
|
3.5
|
42.5
|
1.0
|
HA2
|
A:GLY199
|
3.6
|
33.2
|
1.0
|
C
|
A:GLY119
|
3.8
|
31.1
|
1.0
|
CA
|
A:GLY199
|
3.9
|
27.7
|
1.0
|
HB2
|
A:MET120
|
3.9
|
32.7
|
1.0
|
HG2
|
A:GLU200
|
3.9
|
51.9
|
1.0
|
HB3
|
A:MET120
|
3.9
|
32.7
|
1.0
|
CB
|
A:GLU200
|
3.9
|
30.1
|
1.0
|
C
|
A:GLY199
|
4.1
|
28.4
|
1.0
|
CA
|
A:GLU200
|
4.1
|
24.9
|
1.0
|
CB
|
A:MET120
|
4.2
|
27.2
|
1.0
|
CA
|
A:MET120
|
4.3
|
29.2
|
1.0
|
H
|
A:ASP121
|
4.3
|
40.5
|
1.0
|
CG
|
A:GLU200
|
4.3
|
43.2
|
1.0
|
O
|
A:GLU200
|
4.4
|
26.0
|
1.0
|
HG3
|
A:GLU200
|
4.6
|
51.9
|
1.0
|
HB3
|
A:GLU200
|
4.7
|
36.1
|
1.0
|
HD12
|
A:ILE109
|
4.7
|
33.2
|
1.0
|
O
|
A:ASP118
|
4.7
|
44.3
|
1.0
|
C
|
A:GLU200
|
4.7
|
24.5
|
1.0
|
N
|
A:GLY119
|
4.7
|
38.7
|
1.0
|
O
|
A:HOH557
|
4.8
|
38.1
|
1.0
|
HD11
|
A:ILE109
|
4.9
|
33.2
|
1.0
|
HA
|
A:MET120
|
5.0
|
35.0
|
1.0
|
HA
|
A:GLU200
|
5.0
|
29.8
|
1.0
|
N
|
A:ASP121
|
5.0
|
33.7
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 5 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:25.3
occ:0.84
|
HH12
|
B:ARG93
|
2.4
|
18.5
|
1.0
|
HH22
|
B:ARG93
|
2.5
|
20.6
|
1.0
|
O
|
B:HOH592
|
2.8
|
41.1
|
1.0
|
HB3
|
B:LYS213
|
2.8
|
26.8
|
1.0
|
O
|
B:HOH428
|
3.0
|
21.7
|
1.0
|
H
|
B:GLU214
|
3.0
|
28.8
|
1.0
|
HB2
|
A:LYS219
|
3.1
|
20.8
|
1.0
|
HD2
|
B:LYS213
|
3.1
|
28.5
|
1.0
|
HG2
|
B:LYS213
|
3.2
|
26.5
|
1.0
|
NH1
|
B:ARG93
|
3.2
|
15.4
|
1.0
|
NH2
|
B:ARG93
|
3.2
|
17.2
|
1.0
|
HA
|
B:LYS213
|
3.3
|
25.8
|
1.0
|
HG3
|
B:GLU214
|
3.3
|
35.6
|
1.0
|
CB
|
B:LYS213
|
3.5
|
22.3
|
1.0
|
HB2
|
B:ALA97
|
3.5
|
17.7
|
1.0
|
CG
|
B:LYS213
|
3.6
|
22.1
|
1.0
|
CZ
|
B:ARG93
|
3.7
|
13.9
|
1.0
|
N
|
B:GLU214
|
3.7
|
24.0
|
1.0
|
CD
|
B:LYS213
|
3.8
|
23.7
|
1.0
|
CA
|
B:LYS213
|
3.8
|
21.5
|
1.0
|
HH11
|
B:ARG93
|
3.9
|
18.5
|
1.0
|
HH21
|
B:ARG93
|
3.9
|
20.6
|
1.0
|
CB
|
A:LYS219
|
4.1
|
17.3
|
1.0
|
CG
|
B:GLU214
|
4.2
|
29.7
|
1.0
|
HG2
|
B:GLU214
|
4.2
|
35.6
|
1.0
|
HB3
|
A:ALA218
|
4.2
|
18.7
|
1.0
|
C
|
B:LYS213
|
4.2
|
22.5
|
1.0
|
O
|
A:HOH432
|
4.3
|
22.8
|
1.0
|
HD3
|
B:LYS213
|
4.3
|
28.5
|
1.0
|
H
|
A:LYS219
|
4.3
|
18.4
|
1.0
|
HB2
|
B:LYS213
|
4.3
|
26.8
|
1.0
|
HG3
|
A:LYS219
|
4.4
|
23.3
|
1.0
|
HA
|
A:LYS219
|
4.4
|
19.9
|
1.0
|
CB
|
B:ALA97
|
4.5
|
14.8
|
1.0
|
HG3
|
B:LYS213
|
4.5
|
26.5
|
1.0
|
HB3
|
A:LYS219
|
4.6
|
20.8
|
1.0
|
HA
|
B:GLU214
|
4.6
|
28.5
|
1.0
|
N
|
A:LYS219
|
4.6
|
15.3
|
1.0
|
CA
|
A:LYS219
|
4.6
|
16.6
|
1.0
|
HD3
|
A:LYS219
|
4.7
|
43.8
|
1.0
|
CA
|
B:GLU214
|
4.7
|
23.8
|
1.0
|
HB1
|
B:ALA97
|
4.7
|
17.7
|
1.0
|
CG
|
A:LYS219
|
4.8
|
19.4
|
1.0
|
O
|
A:HOH627
|
4.8
|
38.0
|
1.0
|
HE3
|
B:LYS213
|
4.9
|
32.9
|
1.0
|
O
|
B:HOH461
|
4.9
|
29.8
|
1.0
|
OE2
|
B:GLU214
|
4.9
|
49.8
|
1.0
|
HA
|
B:ALA97
|
4.9
|
18.2
|
1.0
|
NE
|
B:ARG93
|
5.0
|
13.7
|
1.0
|
CE
|
B:LYS213
|
5.0
|
27.4
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 6 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:23.1
occ:0.77
|
HG1
|
A:THR206
|
2.3
|
21.0
|
1.0
|
H
|
B:SER101
|
2.5
|
19.5
|
0.2
|
H
|
B:SER101
|
2.6
|
19.5
|
0.8
|
HH22
|
B:ARG229
|
2.6
|
29.8
|
1.0
|
HD21
|
B:ASN100
|
2.6
|
42.0
|
1.0
|
HG
|
B:SER101
|
3.0
|
13.9
|
0.2
|
OG1
|
A:THR206
|
3.1
|
17.5
|
1.0
|
HB3
|
B:ASN100
|
3.2
|
24.4
|
1.0
|
HB3
|
B:SER101
|
3.3
|
17.5
|
0.8
|
HG21
|
A:THR206
|
3.3
|
21.4
|
1.0
|
HB3
|
A:SER101
|
3.3
|
20.5
|
0.4
|
HA
|
B:ASN100
|
3.3
|
17.5
|
1.0
|
O
|
A:HOH624
|
3.4
|
32.5
|
1.0
|
N
|
B:SER101
|
3.4
|
16.2
|
1.0
|
NH2
|
B:ARG229
|
3.4
|
24.9
|
1.0
|
OG
|
B:SER101
|
3.4
|
11.6
|
0.2
|
ND2
|
B:ASN100
|
3.5
|
35.0
|
1.0
|
HH12
|
B:ARG229
|
3.5
|
31.9
|
1.0
|
HB2
|
A:SER101
|
3.6
|
23.7
|
0.6
|
HB2
|
B:SER101
|
3.8
|
17.5
|
0.8
|
HG21
|
A:VAL88
|
3.8
|
16.4
|
1.0
|
HG11
|
A:VAL88
|
3.8
|
16.4
|
1.0
|
HH21
|
B:ARG229
|
3.8
|
29.8
|
1.0
|
CB
|
B:ASN100
|
3.9
|
20.3
|
1.0
|
CB
|
B:SER101
|
3.9
|
14.6
|
0.8
|
CA
|
B:ASN100
|
3.9
|
14.6
|
1.0
|
CB
|
A:THR206
|
3.9
|
15.9
|
1.0
|
CG2
|
A:THR206
|
4.0
|
17.9
|
1.0
|
HB
|
A:THR206
|
4.0
|
19.1
|
1.0
|
HD22
|
B:ASN100
|
4.0
|
42.0
|
1.0
|
C
|
B:ASN100
|
4.1
|
14.2
|
1.0
|
CG
|
B:ASN100
|
4.2
|
31.4
|
1.0
|
HG23
|
A:THR206
|
4.2
|
21.4
|
1.0
|
NH1
|
B:ARG229
|
4.2
|
26.6
|
1.0
|
HB3
|
B:SER101
|
4.2
|
20.7
|
0.2
|
CB
|
B:SER101
|
4.2
|
17.2
|
0.2
|
CA
|
B:SER101
|
4.3
|
15.2
|
0.8
|
CZ
|
B:ARG229
|
4.3
|
24.3
|
1.0
|
CB
|
A:SER101
|
4.3
|
17.1
|
0.4
|
CA
|
B:SER101
|
4.3
|
16.9
|
0.2
|
HB
|
A:VAL88
|
4.4
|
16.1
|
1.0
|
H
|
A:SER101
|
4.4
|
18.3
|
0.6
|
H
|
A:SER101
|
4.4
|
18.3
|
0.4
|
HD21
|
B:LEU226
|
4.5
|
24.6
|
1.0
|
CB
|
A:SER101
|
4.5
|
19.8
|
0.6
|
CG2
|
A:VAL88
|
4.7
|
13.7
|
1.0
|
CG1
|
A:VAL88
|
4.7
|
13.7
|
1.0
|
OG
|
A:SER101
|
4.7
|
17.0
|
0.4
|
HB2
|
B:ASN100
|
4.7
|
24.4
|
1.0
|
HB3
|
A:SER101
|
4.7
|
23.7
|
0.6
|
HB2
|
A:SER101
|
4.8
|
20.5
|
0.4
|
HG22
|
A:THR206
|
4.8
|
21.4
|
1.0
|
CB
|
A:VAL88
|
4.8
|
13.5
|
1.0
|
CL
|
A:CL303
|
4.8
|
28.1
|
0.6
|
N
|
A:SER101
|
4.9
|
15.3
|
1.0
|
HA
|
A:SER101
|
4.9
|
19.4
|
0.6
|
O
|
A:HOH544
|
5.0
|
42.6
|
1.0
|
HA
|
B:SER101
|
5.0
|
18.2
|
0.8
|
O
|
B:SER101
|
5.0
|
17.7
|
1.0
|
HH11
|
B:ARG229
|
5.0
|
31.9
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 4io6
Go back to
Chlorine Binding Sites List in 4io6
Chlorine binding site 7 out
of 7 in the Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the AVGLUR1 Ligand Binding Domain Complex with Methionine at 1.6 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:16.8
occ:0.86
|
HH22
|
B:ARG136
|
2.4
|
27.0
|
1.0
|
H
|
B:ASP180
|
2.4
|
15.9
|
1.0
|
HH21
|
B:ARG162
|
2.5
|
22.7
|
1.0
|
HE
|
B:ARG162
|
2.5
|
24.7
|
1.0
|
HG1
|
B:THR183
|
2.8
|
22.6
|
1.0
|
HH12
|
B:ARG136
|
2.8
|
23.5
|
1.0
|
HA
|
B:MET179
|
3.0
|
16.8
|
1.0
|
NH2
|
B:ARG136
|
3.2
|
22.5
|
1.0
|
N
|
B:ASP180
|
3.2
|
13.3
|
1.0
|
HG3
|
B:MET301
|
3.2
|
23.6
|
1.0
|
HG2
|
B:MET179
|
3.3
|
20.3
|
1.0
|
NH2
|
B:ARG162
|
3.3
|
18.9
|
1.0
|
HB3
|
B:MET179
|
3.3
|
18.0
|
1.0
|
HE3
|
B:MET179
|
3.3
|
20.7
|
1.0
|
NE
|
B:ARG162
|
3.3
|
20.6
|
1.0
|
HG2
|
B:MET301
|
3.3
|
23.6
|
1.0
|
OG1
|
B:THR183
|
3.4
|
18.9
|
1.0
|
HE3
|
B:MET301
|
3.4
|
32.2
|
1.0
|
HE2
|
B:MET179
|
3.5
|
20.7
|
1.0
|
HB2
|
B:ASP180
|
3.5
|
15.2
|
1.0
|
NH1
|
B:ARG136
|
3.5
|
19.6
|
1.0
|
CA
|
B:MET179
|
3.6
|
14.0
|
1.0
|
CZ
|
B:ARG162
|
3.7
|
18.6
|
1.0
|
CB
|
B:MET179
|
3.7
|
15.0
|
1.0
|
O
|
B:HOH401
|
3.7
|
16.4
|
1.0
|
CG
|
B:MET301
|
3.7
|
19.7
|
1.0
|
HH21
|
B:ARG136
|
3.8
|
27.0
|
1.0
|
CZ
|
B:ARG136
|
3.8
|
20.2
|
1.0
|
CE
|
B:MET179
|
3.8
|
17.2
|
1.0
|
CG
|
B:MET179
|
3.9
|
16.9
|
1.0
|
C
|
B:MET179
|
3.9
|
13.9
|
1.0
|
HH22
|
B:ARG162
|
3.9
|
22.7
|
1.0
|
OD2
|
B:ASP180
|
4.0
|
16.1
|
1.0
|
CB
|
B:ASP180
|
4.1
|
12.7
|
1.0
|
HE2
|
B:MET301
|
4.1
|
32.2
|
1.0
|
CE
|
B:MET301
|
4.1
|
26.9
|
1.0
|
CG
|
B:ASP180
|
4.2
|
16.2
|
1.0
|
CA
|
B:ASP180
|
4.2
|
12.8
|
1.0
|
HH11
|
B:ARG136
|
4.2
|
23.5
|
1.0
|
HD3
|
B:ARG162
|
4.4
|
25.9
|
1.0
|
CD
|
B:ARG162
|
4.4
|
21.6
|
1.0
|
HG2
|
B:ARG162
|
4.5
|
30.9
|
1.0
|
CB
|
B:THR183
|
4.6
|
18.6
|
1.0
|
HB
|
B:THR183
|
4.6
|
22.3
|
1.0
|
HE1
|
B:MET179
|
4.6
|
20.7
|
1.0
|
HE1
|
B:MET165
|
4.6
|
29.0
|
1.0
|
O
|
B:ASP180
|
4.6
|
14.9
|
1.0
|
HB2
|
B:MET179
|
4.7
|
18.0
|
1.0
|
HG3
|
B:MET179
|
4.7
|
20.3
|
1.0
|
SD
|
B:MET179
|
4.7
|
19.6
|
1.0
|
SD
|
B:MET301
|
4.7
|
21.0
|
1.0
|
HB2
|
B:MET301
|
4.8
|
22.1
|
1.0
|
O
|
B:PHE178
|
4.8
|
16.8
|
1.0
|
HG21
|
B:THR183
|
4.8
|
23.3
|
1.0
|
OD1
|
B:ASP180
|
4.9
|
16.2
|
1.0
|
HE1
|
B:MET301
|
4.9
|
32.2
|
1.0
|
CB
|
B:MET301
|
4.9
|
18.4
|
1.0
|
C
|
B:ASP180
|
4.9
|
13.1
|
1.0
|
N
|
B:MET179
|
5.0
|
14.3
|
1.0
|
CG
|
B:ARG162
|
5.0
|
25.7
|
1.0
|
HA
|
B:ASP180
|
5.0
|
15.3
|
1.0
|
HB3
|
B:ASP180
|
5.0
|
15.2
|
1.0
|
|
Reference:
S.Lomash,
S.Chittori,
P.Brown,
M.L.Mayer.
Anions Mediate Ligand Binding in Adineta Vaga Glutamate Receptor Ion Channels. Structure V. 21 414 2013.
ISSN: ISSN 0969-2126
PubMed: 23434404
DOI: 10.1016/J.STR.2013.01.006
Page generated: Sun Jul 21 16:56:31 2024
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