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Chlorine in PDB 4ip0: X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution

Enzymatic activity of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution

All present enzymatic activity of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution, PDB code: 4ip0 was solved by I.I.Prokofev, A.A.Lashkov, A.G.Gabdoulkhakov, C.Betzel, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.93 / 1.29
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 63.671, 71.062, 87.908, 69.63, 72.56, 85.73
R / Rfree (%) 17.2 / 20

Other elements in 4ip0:

The structure of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution also contains other interesting chemical elements:

Potassium (K) 1 atom
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution (pdb code 4ip0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution, PDB code: 4ip0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4ip0

Go back to Chlorine Binding Sites List in 4ip0
Chlorine binding site 1 out of 2 in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:10.7
occ:1.00
 O2 C:EDO303 2.8 11.8 0.7
O C:HOH407 3.1 5.4 1.0
NH2 C:ARG167 3.1 3.7 1.0
O C:HOH524 3.2 15.6 1.0
C2 C:EDO303 3.4 9.8 0.7
N C:GLY95 3.5 3.7 1.0
CA C:GLY95 3.6 4.1 1.0
CG2 C:ILE220 3.7 5.9 1.0
CE1 C:PHE161 3.8 5.3 1.0
NH1 C:ARG167 4.0 4.0 1.0
CZ C:ARG167 4.0 3.2 1.0
OE1 C:GLN165 4.1 4.4 1.0
C C:THR94 4.1 3.9 1.0
CZ C:PHE161 4.3 5.2 1.0
O C:THR94 4.6 4.7 1.0
C1 C:EDO303 4.6 9.1 0.7
CG C:PRO228 4.7 7.0 1.0
O1 C:EDO303 4.7 12.9 0.7
CA C:THR94 4.7 3.4 1.0
CD1 C:PHE161 4.8 4.2 1.0
O C:PHE194 4.8 3.8 1.0
CG1 C:ILE219 4.8 6.3 1.0
CD C:ARG222 4.9 4.9 1.0
CD1 C:ILE219 5.0 6.7 1.0

Chlorine binding site 2 out of 2 in 4ip0

Go back to Chlorine Binding Sites List in 4ip0
Chlorine binding site 2 out of 2 in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl303

b:12.1
occ:1.00
 O2 F:EDO304 2.9 15.6 1.0
NH2 F:ARG167 3.1 4.2 1.0
O F:HOH410 3.1 5.9 1.0
O F:HOH578 3.3 18.7 1.0
C2 F:EDO304 3.3 15.3 1.0
N F:GLY95 3.5 4.1 1.0
CA F:GLY95 3.6 4.2 1.0
CG2 F:ILE220 3.6 4.8 1.0
OE1 F:GLN165 3.8 4.7 1.0
NH1 F:ARG167 3.8 4.3 1.0
CE1 F:PHE161 3.8 5.1 1.0
CZ F:ARG167 3.9 3.8 1.0
C F:THR94 4.1 3.5 1.0
CZ F:PHE161 4.3 5.4 1.0
C1 F:EDO304 4.5 15.6 1.0
O1 F:EDO304 4.5 20.6 1.0
O F:THR94 4.6 4.0 1.0
O F:PHE194 4.6 3.7 1.0
CD1 F:PHE161 4.7 3.7 1.0
CA F:THR94 4.8 4.3 1.0
C F:GLY95 4.9 4.1 1.0
CD F:GLN165 4.9 3.5 1.0
CG F:PRO228 4.9 7.2 1.0

Reference:

I.I.Prokofev, A.A.Lashkov, A.G.Gabdoulkhakov, C.Betzel, A.M.Mikhailov. X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution To Be Published.
Page generated: Sat Dec 12 10:46:36 2020

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