Atomistry » Chlorine » PDB 4io3-4ixt » 4iuc
Atomistry »
  Chlorine »
    PDB 4io3-4ixt »
      4iuc »

Chlorine in PDB 4iuc: Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2

Enzymatic activity of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2

All present enzymatic activity of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2:
1.12.5.1;

Protein crystallography data

The structure of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2, PDB code: 4iuc was solved by S.Frielingsdorf, A.Schmidt, J.Fritsch, O.Lenz, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.36 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.618, 95.742, 120.702, 90.00, 90.00, 90.00
R / Rfree (%) 12.5 / 15.7

Other elements in 4iuc:

The structure of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Magnesium (Mg) 1 atom
Iron (Fe) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2 (pdb code 4iuc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2, PDB code: 4iuc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4iuc

Go back to Chlorine Binding Sites List in 4iuc
Chlorine binding site 1 out of 2 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl703

b:29.9
occ:0.83
O L:HOH1414 2.9 33.9 1.0
N L:LEU376 3.0 12.6 1.0
NH1 L:ARG384 3.0 19.2 1.0
O L:HOH1506 3.1 30.9 0.5
CG L:ARG384 3.2 20.5 1.0
CD L:ARG384 3.3 20.6 1.0
CA L:VAL375 3.6 12.6 1.0
CG2 L:VAL375 3.7 16.6 1.0
C L:VAL375 3.8 12.3 1.0
CA L:LEU376 4.0 12.3 1.0
CB L:LEU376 4.0 12.5 1.0
CZ L:ARG384 4.0 20.6 1.0
O L:LEU376 4.0 14.7 1.0
NE L:ARG384 4.1 20.5 1.0
CB L:VAL375 4.2 14.1 1.0
CG L:LEU376 4.3 11.5 1.0
C L:LEU376 4.5 13.2 1.0
O L:HOH1480 4.5 31.5 1.0
CB L:ARG384 4.7 18.6 1.0
O L:TYR374 4.7 13.4 1.0
N L:VAL375 4.8 12.1 1.0
O L:HOH1506 4.8 30.5 0.5
O L:HOH1501 4.9 31.9 1.0
O L:VAL375 5.0 12.8 1.0

Chlorine binding site 2 out of 2 in 4iuc

Go back to Chlorine Binding Sites List in 4iuc
Chlorine binding site 2 out of 2 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form - Oxidized State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl1004

b:15.3
occ:0.85
N S:GLY256 3.2 9.9 1.0
O S:HOH1112 3.2 13.0 1.0
N S:CYS120 3.2 8.2 1.0
O S:HOH1148 3.2 17.9 1.0
CA S:CYS120 3.5 8.5 1.0
CB S:TRP118 3.7 9.5 1.0
CA S:GLY256 3.8 10.3 1.0
O S:GLU254 4.1 10.0 1.0
CD1 S:PHE257 4.1 9.5 1.0
C S:ASP255 4.2 9.5 1.0
N S:PHE257 4.2 9.4 1.0
N S:GLY119 4.3 8.7 1.0
CE1 S:PHE257 4.3 9.9 1.0
CA S:ASP255 4.3 8.8 1.0
C S:TRP118 4.3 9.2 1.0
C S:GLY119 4.3 8.3 1.0
CD1 S:TRP258 4.4 8.8 1.0
C S:CYS120 4.5 8.3 1.0
CB S:CYS120 4.5 8.8 1.0
O S:CYS120 4.5 8.4 1.0
C S:GLY256 4.5 9.5 1.0
O S:SER114 4.5 8.6 1.0
CB S:SER114 4.6 9.4 1.0
CG S:TRP118 4.6 9.9 1.0
CA S:TRP118 4.6 9.1 1.0
O S:TRP118 4.7 11.6 1.0
CA S:GLY119 4.7 9.1 1.0
O S:HOH1123 4.7 13.1 1.0
OD1 S:ASP255 4.7 11.4 1.0
NE1 S:TRP258 4.8 8.3 1.0
CD1 S:TRP118 4.9 11.1 1.0
O S:HOH1250 4.9 20.5 1.0
C S:GLU254 4.9 8.7 1.0

Reference:

S.Frielingsdorf, J.Fritsch, A.Schmidt, M.Hammer, J.Lowenstein, E.Siebert, V.Pelmenschikov, T.Jaenicke, J.Kalms, Y.Rippers, F.Lendzian, I.Zebger, C.Teutloff, M.Kaupp, R.Bittl, P.Hildebrandt, B.Friedrich, O.Lenz, P.Scheerer. Reversible [4FE-3S] Cluster Morphing in An O2-Tolerant [Nife] Hydrogenase. Nat.Chem.Biol. V. 10 378 2014.
ISSN: ISSN 1552-4450
PubMed: 24705592
DOI: 10.1038/NCHEMBIO.1500
Page generated: Sun Jul 21 17:03:42 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy