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Chlorine in PDB 4jbe: 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.

Protein crystallography data

The structure of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis., PDB code: 4jbe was solved by G.Minasov, E.V.Filippova, A.Halavaty, L.Shuvalova, O.Kiryukhina, M.Endres, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.73 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 265.510, 55.118, 64.246, 90.00, 91.18, 90.00
R / Rfree (%) 16.8 / 20.8

Other elements in 4jbe:

The structure of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. also contains other interesting chemical elements:

Calcium (Ca) 10 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Chlorine atom in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. (pdb code 4jbe). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis., PDB code: 4jbe:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 13 in 4jbe

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Chlorine binding site 1 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl507

b:46.3
occ:1.00
NH1 A:ARG149 3.3 34.4 1.0
N A:SER152 3.4 28.3 1.0
NH2 A:ARG149 3.4 41.8 1.0
OG A:SER152 3.7 32.7 1.0
CZ A:ARG149 3.9 33.2 1.0
CA A:GLY151 3.9 26.7 1.0
CB A:SER152 4.0 29.8 1.0
O A:HOH635 4.1 30.1 1.0
O A:PRO186 4.1 40.7 1.0
C A:GLY151 4.2 27.9 1.0
CA A:SER152 4.3 28.8 1.0
CB A:ARG188 4.4 40.2 1.0
O A:HOH955 4.4 58.5 1.0
CA A:ARG188 4.5 39.3 1.0
O A:HOH890 4.5 46.8 1.0
CG A:ARG188 4.7 44.0 1.0
N A:ARG188 4.7 38.5 1.0
NH2 A:ARG188 5.0 64.4 1.0

Chlorine binding site 2 out of 13 in 4jbe

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Chlorine binding site 2 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:50.5
occ:1.00
N A:ASP199 3.2 38.2 1.0
C A:LEU197 3.3 32.3 1.0
CA A:LEU197 3.4 31.7 1.0
CB A:ASP199 3.6 42.3 1.0
N A:PRO198 3.6 34.5 1.0
CD A:PRO198 3.7 34.9 1.0
CA A:ASP199 3.8 40.2 1.0
O A:LEU197 3.8 32.9 1.0
CB A:LEU197 3.8 31.2 1.0
N A:LEU200 3.9 35.4 1.0
CG A:ASP199 4.1 46.6 1.0
CG A:LEU200 4.1 39.4 1.0
CD2 A:LEU197 4.1 32.5 1.0
C A:ASP199 4.1 38.9 1.0
C A:PRO198 4.2 36.9 1.0
CG A:PRO198 4.3 37.4 1.0
OD2 A:ASP199 4.3 50.3 1.0
CD1 A:LEU200 4.3 36.9 1.0
CA A:PRO198 4.4 34.8 1.0
CB A:LEU200 4.5 32.2 1.0
CG A:LEU197 4.6 31.9 1.0
O A:ARG196 4.7 32.6 1.0
N A:LEU197 4.7 31.2 1.0
CA A:LEU200 4.8 33.5 1.0
OD1 A:ASP199 4.9 51.4 1.0

Chlorine binding site 3 out of 13 in 4jbe

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Chlorine binding site 3 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl509

b:46.3
occ:1.00
O A:HOH661 2.8 38.8 1.0
N A:ASP28 3.1 33.0 1.0
NH2 A:ARG98 3.4 49.6 1.0
CG A:ASP28 3.6 34.6 1.0
CA A:PRO27 3.6 34.0 1.0
CB A:PRO27 3.8 35.9 1.0
OD2 A:ASP28 3.8 36.5 1.0
OD1 A:ASP28 3.8 35.9 1.0
C A:PRO27 3.9 32.6 1.0
CB A:ASP28 3.9 33.3 1.0
CA A:ASP28 4.1 32.2 1.0
CZ A:ARG98 4.6 45.5 1.0
NH2 A:ARG143 4.6 38.4 1.0
NH1 A:ARG98 4.9 43.4 1.0
N A:PRO27 5.0 33.5 1.0

Chlorine binding site 4 out of 13 in 4jbe

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Chlorine binding site 4 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:26.3
occ:1.00
O A:HOH622 3.0 35.1 1.0
OG1 A:THR213 3.1 23.3 1.0
O A:HOH687 3.2 30.2 1.0
N A:GLY208 3.2 26.8 1.0
ND2 A:ASN124 3.2 24.3 1.0
CA A:GLY208 3.7 28.1 1.0
CB A:LEU206 3.7 22.6 1.0
N A:ARG207 3.8 23.5 1.0
CA A:LEU206 4.0 22.5 1.0
O A:ASN124 4.0 24.9 1.0
C A:LEU206 4.0 23.4 1.0
CB A:THR213 4.0 24.8 1.0
CD2 A:LEU206 4.1 23.1 1.0
CD1 A:LEU216 4.1 24.9 1.0
CG A:ASN124 4.2 26.8 1.0
CG2 A:THR213 4.2 24.4 1.0
CA A:THR213 4.3 24.9 1.0
C A:ARG207 4.3 26.8 1.0
CB A:ASN124 4.3 23.7 1.0
CG A:LEU206 4.4 24.6 1.0
CA A:ARG207 4.6 25.0 1.0
C A:ASN124 4.6 23.2 1.0
C A:GLY208 4.6 29.2 1.0
O A:LEU206 4.8 24.9 1.0
N A:THR213 4.9 24.2 1.0
O A:HOH681 4.9 31.1 1.0
CD1 A:LEU206 5.0 23.5 1.0

Chlorine binding site 5 out of 13 in 4jbe

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Chlorine binding site 5 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl511

b:60.5
occ:1.00
CG2 A:THR99 3.8 41.7 0.4
CD A:ARG114 3.9 39.6 1.0
CG2 A:THR99 4.0 42.0 0.6
OG1 A:THR99 4.1 42.9 0.4
O A:HOH795 4.2 43.5 1.0
CG1 A:VAL112 4.2 37.7 1.0
NH1 A:ARG114 4.4 37.9 1.0
CB A:THR99 4.5 40.7 0.6
CG2 A:VAL112 4.6 36.8 1.0
CB A:THR99 4.6 41.5 0.4
CD2 B:PHE354 4.6 35.2 1.0
CB A:VAL112 4.6 35.8 1.0
CG A:ARG114 4.7 36.3 1.0
CE2 B:PHE354 4.8 33.3 1.0
NE A:ARG114 4.9 40.1 1.0

Chlorine binding site 6 out of 13 in 4jbe

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Chlorine binding site 6 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl512

b:36.6
occ:1.00
O A:HOH844 2.9 40.6 1.0
O A:HOH616 3.0 23.6 1.0
O A:HOH696 3.0 37.1 1.0
NH1 A:ARG329 3.3 35.6 1.0
NH2 A:ARG329 3.5 35.5 1.0
CZ A:ARG329 3.9 35.0 1.0
CB A:GLU326 4.2 22.2 1.0
N A:GLU326 4.2 21.5 1.0
CB A:ALA325 4.3 22.0 1.0
CA A:GLU326 4.6 22.2 1.0
CB A:ASP322 4.7 24.4 1.0
O1S A:MES517 4.8 28.4 1.0
OD2 A:ASP322 4.8 28.1 1.0
C A:ALA325 4.9 21.4 1.0

Chlorine binding site 7 out of 13 in 4jbe

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Chlorine binding site 7 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl513

b:33.6
occ:0.60
CL A:CL514 1.9 32.2 0.4
NH1 A:ARG369 3.3 28.7 1.0
ND2 A:ASN263 3.4 23.6 1.0
NZ A:LYS375 3.6 26.4 1.0
OD1 A:ASP372 3.7 36.1 1.0
CB A:ASP372 3.9 26.4 1.0
CE A:LYS375 3.9 28.6 1.0
CG A:ASP372 4.0 30.7 1.0
OD1 A:ASN263 4.2 25.8 1.0
O A:ARG369 4.2 22.0 1.0
CG A:ASN263 4.2 25.9 1.0
O A:HOH726 4.3 52.8 1.0
O A:HOH792 4.3 34.7 0.5
O A:HOH640 4.3 31.9 1.0
CZ A:ARG369 4.4 30.8 1.0
CD A:LYS375 4.7 29.4 1.0
O A:LEU371 4.7 23.4 1.0
NH2 A:ARG369 4.8 32.7 1.0
OD2 A:ASP372 4.8 34.6 1.0
S2 A:BME515 4.8 40.0 1.0
O A:HOH785 4.9 32.4 1.0

Chlorine binding site 8 out of 13 in 4jbe

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Chlorine binding site 8 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl514

b:32.2
occ:0.40
CL A:CL513 1.9 33.6 0.6
O A:HOH792 2.7 34.7 0.5
NH1 A:ARG369 3.1 28.7 1.0
O A:HOH640 3.9 31.9 1.0
CG1 A:VAL261 4.0 27.4 1.0
CZ A:ARG369 4.1 30.8 1.0
NH2 A:ARG258 4.1 55.5 1.0
NH2 A:ARG369 4.2 32.7 1.0
OD1 A:ASN263 4.4 25.8 1.0
CB A:VAL261 4.4 26.2 1.0
ND2 A:ASN263 4.5 23.6 1.0
O1 A:BME515 4.6 32.2 1.0
NZ A:LYS375 4.6 26.4 1.0
C2 A:BME515 4.7 37.5 1.0
S2 A:BME515 4.7 40.0 1.0
CG A:ASN263 4.8 25.9 1.0
CG2 A:VAL261 4.9 26.4 1.0
OD1 A:ASP372 4.9 36.1 1.0

Chlorine binding site 9 out of 13 in 4jbe

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Chlorine binding site 9 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl505

b:35.1
occ:1.00
O B:HOH677 3.1 38.3 1.0
O B:HOH818 3.1 30.1 0.5
ND2 B:ASN124 3.1 29.7 1.0
N B:GLY208 3.2 33.7 1.0
OG1 B:THR213 3.4 35.0 1.0
CA B:GLY208 3.7 35.9 1.0
N B:ARG207 3.8 28.7 1.0
CB B:LEU206 3.8 29.1 1.0
O B:ASN124 4.0 29.6 1.0
CG2 B:THR213 4.0 31.8 1.0
CA B:LEU206 4.0 28.2 1.0
CB B:THR213 4.1 32.1 1.0
CD2 B:LEU206 4.1 24.7 1.0
C B:LEU206 4.1 29.8 1.0
CG B:ASN124 4.1 32.6 1.0
CD1 B:LEU216 4.2 35.2 1.0
CB B:ASN124 4.3 29.8 1.0
CA B:THR213 4.3 32.3 1.0
C B:ARG207 4.4 33.0 1.0
CG B:LEU206 4.5 29.0 1.0
C B:ASN124 4.5 29.7 1.0
CA B:ARG207 4.6 30.9 1.0
O B:HOH721 4.7 37.0 1.0
C B:GLY208 4.7 36.4 1.0
N B:THR213 4.9 33.9 1.0
O B:LEU206 5.0 30.6 1.0

Chlorine binding site 10 out of 13 in 4jbe

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Chlorine binding site 10 out of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:36.6
occ:0.50
CL B:CL506 0.0 36.6 0.5
CL B:CL506 2.2 44.5 0.5
ND2 B:ASN263 3.2 29.1 1.0
NH1 B:ARG369 3.2 33.1 1.0
OD2 B:ASP372 3.5 46.3 1.0
NZ B:LYS375 3.6 44.1 1.0
CB B:ASP372 3.8 35.5 1.0
CE B:LYS375 3.9 44.5 1.0
O B:ARG369 4.0 32.9 1.0
CG B:ASP372 4.0 41.0 1.0
OD1 B:ASN263 4.0 32.8 1.0
CG B:ASN263 4.0 32.0 1.0
O B:HOH723 4.1 53.0 1.0
O B:HOH737 4.2 53.5 1.0
CZ B:ARG369 4.4 36.8 1.0
S2 B:BME509 4.5 51.0 1.0
O B:LEU371 4.6 31.7 1.0
C2 B:BME509 4.6 49.5 1.0
CD B:LYS375 4.7 41.8 1.0
NH2 B:ARG369 4.8 39.2 1.0
O B:HOH762 4.9 45.0 1.0

Reference:

G.Minasov, E.V.Filippova, A.Halavaty, L.Shuvalova, O.Kiryukhina, M.Endres, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg). 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. To Be Published.
Page generated: Sun Jul 21 17:18:55 2024

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