Chlorine in PDB 4jbe: 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Protein crystallography data
The structure of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis., PDB code: 4jbe
was solved by
G.Minasov,
E.V.Filippova,
A.Halavaty,
L.Shuvalova,
O.Kiryukhina,
M.Endres,
A.Joachimiak,
W.F.Anderson,
Midwest Center For Structural Genomics(Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.73 /
1.95
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
265.510,
55.118,
64.246,
90.00,
91.18,
90.00
|
R / Rfree (%)
|
16.8 /
20.8
|
Other elements in 4jbe:
The structure of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Chlorine atom in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
(pdb code 4jbe). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the
1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis., PDB code: 4jbe:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 13 in 4jbe
Go back to
Chlorine Binding Sites List in 4jbe
Chlorine binding site 1 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl507
b:46.3
occ:1.00
|
NH1
|
A:ARG149
|
3.3
|
34.4
|
1.0
|
N
|
A:SER152
|
3.4
|
28.3
|
1.0
|
NH2
|
A:ARG149
|
3.4
|
41.8
|
1.0
|
OG
|
A:SER152
|
3.7
|
32.7
|
1.0
|
CZ
|
A:ARG149
|
3.9
|
33.2
|
1.0
|
CA
|
A:GLY151
|
3.9
|
26.7
|
1.0
|
CB
|
A:SER152
|
4.0
|
29.8
|
1.0
|
O
|
A:HOH635
|
4.1
|
30.1
|
1.0
|
O
|
A:PRO186
|
4.1
|
40.7
|
1.0
|
C
|
A:GLY151
|
4.2
|
27.9
|
1.0
|
CA
|
A:SER152
|
4.3
|
28.8
|
1.0
|
CB
|
A:ARG188
|
4.4
|
40.2
|
1.0
|
O
|
A:HOH955
|
4.4
|
58.5
|
1.0
|
CA
|
A:ARG188
|
4.5
|
39.3
|
1.0
|
O
|
A:HOH890
|
4.5
|
46.8
|
1.0
|
CG
|
A:ARG188
|
4.7
|
44.0
|
1.0
|
N
|
A:ARG188
|
4.7
|
38.5
|
1.0
|
NH2
|
A:ARG188
|
5.0
|
64.4
|
1.0
|
|
Chlorine binding site 2 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 2 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl508
b:50.5
occ:1.00
|
N
|
A:ASP199
|
3.2
|
38.2
|
1.0
|
C
|
A:LEU197
|
3.3
|
32.3
|
1.0
|
CA
|
A:LEU197
|
3.4
|
31.7
|
1.0
|
CB
|
A:ASP199
|
3.6
|
42.3
|
1.0
|
N
|
A:PRO198
|
3.6
|
34.5
|
1.0
|
CD
|
A:PRO198
|
3.7
|
34.9
|
1.0
|
CA
|
A:ASP199
|
3.8
|
40.2
|
1.0
|
O
|
A:LEU197
|
3.8
|
32.9
|
1.0
|
CB
|
A:LEU197
|
3.8
|
31.2
|
1.0
|
N
|
A:LEU200
|
3.9
|
35.4
|
1.0
|
CG
|
A:ASP199
|
4.1
|
46.6
|
1.0
|
CG
|
A:LEU200
|
4.1
|
39.4
|
1.0
|
CD2
|
A:LEU197
|
4.1
|
32.5
|
1.0
|
C
|
A:ASP199
|
4.1
|
38.9
|
1.0
|
C
|
A:PRO198
|
4.2
|
36.9
|
1.0
|
CG
|
A:PRO198
|
4.3
|
37.4
|
1.0
|
OD2
|
A:ASP199
|
4.3
|
50.3
|
1.0
|
CD1
|
A:LEU200
|
4.3
|
36.9
|
1.0
|
CA
|
A:PRO198
|
4.4
|
34.8
|
1.0
|
CB
|
A:LEU200
|
4.5
|
32.2
|
1.0
|
CG
|
A:LEU197
|
4.6
|
31.9
|
1.0
|
O
|
A:ARG196
|
4.7
|
32.6
|
1.0
|
N
|
A:LEU197
|
4.7
|
31.2
|
1.0
|
CA
|
A:LEU200
|
4.8
|
33.5
|
1.0
|
OD1
|
A:ASP199
|
4.9
|
51.4
|
1.0
|
|
Chlorine binding site 3 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 3 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl509
b:46.3
occ:1.00
|
O
|
A:HOH661
|
2.8
|
38.8
|
1.0
|
N
|
A:ASP28
|
3.1
|
33.0
|
1.0
|
NH2
|
A:ARG98
|
3.4
|
49.6
|
1.0
|
CG
|
A:ASP28
|
3.6
|
34.6
|
1.0
|
CA
|
A:PRO27
|
3.6
|
34.0
|
1.0
|
CB
|
A:PRO27
|
3.8
|
35.9
|
1.0
|
OD2
|
A:ASP28
|
3.8
|
36.5
|
1.0
|
OD1
|
A:ASP28
|
3.8
|
35.9
|
1.0
|
C
|
A:PRO27
|
3.9
|
32.6
|
1.0
|
CB
|
A:ASP28
|
3.9
|
33.3
|
1.0
|
CA
|
A:ASP28
|
4.1
|
32.2
|
1.0
|
CZ
|
A:ARG98
|
4.6
|
45.5
|
1.0
|
NH2
|
A:ARG143
|
4.6
|
38.4
|
1.0
|
NH1
|
A:ARG98
|
4.9
|
43.4
|
1.0
|
N
|
A:PRO27
|
5.0
|
33.5
|
1.0
|
|
Chlorine binding site 4 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 4 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl510
b:26.3
occ:1.00
|
O
|
A:HOH622
|
3.0
|
35.1
|
1.0
|
OG1
|
A:THR213
|
3.1
|
23.3
|
1.0
|
O
|
A:HOH687
|
3.2
|
30.2
|
1.0
|
N
|
A:GLY208
|
3.2
|
26.8
|
1.0
|
ND2
|
A:ASN124
|
3.2
|
24.3
|
1.0
|
CA
|
A:GLY208
|
3.7
|
28.1
|
1.0
|
CB
|
A:LEU206
|
3.7
|
22.6
|
1.0
|
N
|
A:ARG207
|
3.8
|
23.5
|
1.0
|
CA
|
A:LEU206
|
4.0
|
22.5
|
1.0
|
O
|
A:ASN124
|
4.0
|
24.9
|
1.0
|
C
|
A:LEU206
|
4.0
|
23.4
|
1.0
|
CB
|
A:THR213
|
4.0
|
24.8
|
1.0
|
CD2
|
A:LEU206
|
4.1
|
23.1
|
1.0
|
CD1
|
A:LEU216
|
4.1
|
24.9
|
1.0
|
CG
|
A:ASN124
|
4.2
|
26.8
|
1.0
|
CG2
|
A:THR213
|
4.2
|
24.4
|
1.0
|
CA
|
A:THR213
|
4.3
|
24.9
|
1.0
|
C
|
A:ARG207
|
4.3
|
26.8
|
1.0
|
CB
|
A:ASN124
|
4.3
|
23.7
|
1.0
|
CG
|
A:LEU206
|
4.4
|
24.6
|
1.0
|
CA
|
A:ARG207
|
4.6
|
25.0
|
1.0
|
C
|
A:ASN124
|
4.6
|
23.2
|
1.0
|
C
|
A:GLY208
|
4.6
|
29.2
|
1.0
|
O
|
A:LEU206
|
4.8
|
24.9
|
1.0
|
N
|
A:THR213
|
4.9
|
24.2
|
1.0
|
O
|
A:HOH681
|
4.9
|
31.1
|
1.0
|
CD1
|
A:LEU206
|
5.0
|
23.5
|
1.0
|
|
Chlorine binding site 5 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 5 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl511
b:60.5
occ:1.00
|
CG2
|
A:THR99
|
3.8
|
41.7
|
0.4
|
CD
|
A:ARG114
|
3.9
|
39.6
|
1.0
|
CG2
|
A:THR99
|
4.0
|
42.0
|
0.6
|
OG1
|
A:THR99
|
4.1
|
42.9
|
0.4
|
O
|
A:HOH795
|
4.2
|
43.5
|
1.0
|
CG1
|
A:VAL112
|
4.2
|
37.7
|
1.0
|
NH1
|
A:ARG114
|
4.4
|
37.9
|
1.0
|
CB
|
A:THR99
|
4.5
|
40.7
|
0.6
|
CG2
|
A:VAL112
|
4.6
|
36.8
|
1.0
|
CB
|
A:THR99
|
4.6
|
41.5
|
0.4
|
CD2
|
B:PHE354
|
4.6
|
35.2
|
1.0
|
CB
|
A:VAL112
|
4.6
|
35.8
|
1.0
|
CG
|
A:ARG114
|
4.7
|
36.3
|
1.0
|
CE2
|
B:PHE354
|
4.8
|
33.3
|
1.0
|
NE
|
A:ARG114
|
4.9
|
40.1
|
1.0
|
|
Chlorine binding site 6 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 6 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl512
b:36.6
occ:1.00
|
O
|
A:HOH844
|
2.9
|
40.6
|
1.0
|
O
|
A:HOH616
|
3.0
|
23.6
|
1.0
|
O
|
A:HOH696
|
3.0
|
37.1
|
1.0
|
NH1
|
A:ARG329
|
3.3
|
35.6
|
1.0
|
NH2
|
A:ARG329
|
3.5
|
35.5
|
1.0
|
CZ
|
A:ARG329
|
3.9
|
35.0
|
1.0
|
CB
|
A:GLU326
|
4.2
|
22.2
|
1.0
|
N
|
A:GLU326
|
4.2
|
21.5
|
1.0
|
CB
|
A:ALA325
|
4.3
|
22.0
|
1.0
|
CA
|
A:GLU326
|
4.6
|
22.2
|
1.0
|
CB
|
A:ASP322
|
4.7
|
24.4
|
1.0
|
O1S
|
A:MES517
|
4.8
|
28.4
|
1.0
|
OD2
|
A:ASP322
|
4.8
|
28.1
|
1.0
|
C
|
A:ALA325
|
4.9
|
21.4
|
1.0
|
|
Chlorine binding site 7 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 7 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl513
b:33.6
occ:0.60
|
CL
|
A:CL514
|
1.9
|
32.2
|
0.4
|
NH1
|
A:ARG369
|
3.3
|
28.7
|
1.0
|
ND2
|
A:ASN263
|
3.4
|
23.6
|
1.0
|
NZ
|
A:LYS375
|
3.6
|
26.4
|
1.0
|
OD1
|
A:ASP372
|
3.7
|
36.1
|
1.0
|
CB
|
A:ASP372
|
3.9
|
26.4
|
1.0
|
CE
|
A:LYS375
|
3.9
|
28.6
|
1.0
|
CG
|
A:ASP372
|
4.0
|
30.7
|
1.0
|
OD1
|
A:ASN263
|
4.2
|
25.8
|
1.0
|
O
|
A:ARG369
|
4.2
|
22.0
|
1.0
|
CG
|
A:ASN263
|
4.2
|
25.9
|
1.0
|
O
|
A:HOH726
|
4.3
|
52.8
|
1.0
|
O
|
A:HOH792
|
4.3
|
34.7
|
0.5
|
O
|
A:HOH640
|
4.3
|
31.9
|
1.0
|
CZ
|
A:ARG369
|
4.4
|
30.8
|
1.0
|
CD
|
A:LYS375
|
4.7
|
29.4
|
1.0
|
O
|
A:LEU371
|
4.7
|
23.4
|
1.0
|
NH2
|
A:ARG369
|
4.8
|
32.7
|
1.0
|
OD2
|
A:ASP372
|
4.8
|
34.6
|
1.0
|
S2
|
A:BME515
|
4.8
|
40.0
|
1.0
|
O
|
A:HOH785
|
4.9
|
32.4
|
1.0
|
|
Chlorine binding site 8 out
of 13 in 4jbe
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Chlorine Binding Sites List in 4jbe
Chlorine binding site 8 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl514
b:32.2
occ:0.40
|
CL
|
A:CL513
|
1.9
|
33.6
|
0.6
|
O
|
A:HOH792
|
2.7
|
34.7
|
0.5
|
NH1
|
A:ARG369
|
3.1
|
28.7
|
1.0
|
O
|
A:HOH640
|
3.9
|
31.9
|
1.0
|
CG1
|
A:VAL261
|
4.0
|
27.4
|
1.0
|
CZ
|
A:ARG369
|
4.1
|
30.8
|
1.0
|
NH2
|
A:ARG258
|
4.1
|
55.5
|
1.0
|
NH2
|
A:ARG369
|
4.2
|
32.7
|
1.0
|
OD1
|
A:ASN263
|
4.4
|
25.8
|
1.0
|
CB
|
A:VAL261
|
4.4
|
26.2
|
1.0
|
ND2
|
A:ASN263
|
4.5
|
23.6
|
1.0
|
O1
|
A:BME515
|
4.6
|
32.2
|
1.0
|
NZ
|
A:LYS375
|
4.6
|
26.4
|
1.0
|
C2
|
A:BME515
|
4.7
|
37.5
|
1.0
|
S2
|
A:BME515
|
4.7
|
40.0
|
1.0
|
CG
|
A:ASN263
|
4.8
|
25.9
|
1.0
|
CG2
|
A:VAL261
|
4.9
|
26.4
|
1.0
|
OD1
|
A:ASP372
|
4.9
|
36.1
|
1.0
|
|
Chlorine binding site 9 out
of 13 in 4jbe
Go back to
Chlorine Binding Sites List in 4jbe
Chlorine binding site 9 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl505
b:35.1
occ:1.00
|
O
|
B:HOH677
|
3.1
|
38.3
|
1.0
|
O
|
B:HOH818
|
3.1
|
30.1
|
0.5
|
ND2
|
B:ASN124
|
3.1
|
29.7
|
1.0
|
N
|
B:GLY208
|
3.2
|
33.7
|
1.0
|
OG1
|
B:THR213
|
3.4
|
35.0
|
1.0
|
CA
|
B:GLY208
|
3.7
|
35.9
|
1.0
|
N
|
B:ARG207
|
3.8
|
28.7
|
1.0
|
CB
|
B:LEU206
|
3.8
|
29.1
|
1.0
|
O
|
B:ASN124
|
4.0
|
29.6
|
1.0
|
CG2
|
B:THR213
|
4.0
|
31.8
|
1.0
|
CA
|
B:LEU206
|
4.0
|
28.2
|
1.0
|
CB
|
B:THR213
|
4.1
|
32.1
|
1.0
|
CD2
|
B:LEU206
|
4.1
|
24.7
|
1.0
|
C
|
B:LEU206
|
4.1
|
29.8
|
1.0
|
CG
|
B:ASN124
|
4.1
|
32.6
|
1.0
|
CD1
|
B:LEU216
|
4.2
|
35.2
|
1.0
|
CB
|
B:ASN124
|
4.3
|
29.8
|
1.0
|
CA
|
B:THR213
|
4.3
|
32.3
|
1.0
|
C
|
B:ARG207
|
4.4
|
33.0
|
1.0
|
CG
|
B:LEU206
|
4.5
|
29.0
|
1.0
|
C
|
B:ASN124
|
4.5
|
29.7
|
1.0
|
CA
|
B:ARG207
|
4.6
|
30.9
|
1.0
|
O
|
B:HOH721
|
4.7
|
37.0
|
1.0
|
C
|
B:GLY208
|
4.7
|
36.4
|
1.0
|
N
|
B:THR213
|
4.9
|
33.9
|
1.0
|
O
|
B:LEU206
|
5.0
|
30.6
|
1.0
|
|
Chlorine binding site 10 out
of 13 in 4jbe
Go back to
Chlorine Binding Sites List in 4jbe
Chlorine binding site 10 out
of 13 in the 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of 1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl506
b:36.6
occ:0.50
|
CL
|
B:CL506
|
0.0
|
36.6
|
0.5
|
CL
|
B:CL506
|
2.2
|
44.5
|
0.5
|
ND2
|
B:ASN263
|
3.2
|
29.1
|
1.0
|
NH1
|
B:ARG369
|
3.2
|
33.1
|
1.0
|
OD2
|
B:ASP372
|
3.5
|
46.3
|
1.0
|
NZ
|
B:LYS375
|
3.6
|
44.1
|
1.0
|
CB
|
B:ASP372
|
3.8
|
35.5
|
1.0
|
CE
|
B:LYS375
|
3.9
|
44.5
|
1.0
|
O
|
B:ARG369
|
4.0
|
32.9
|
1.0
|
CG
|
B:ASP372
|
4.0
|
41.0
|
1.0
|
OD1
|
B:ASN263
|
4.0
|
32.8
|
1.0
|
CG
|
B:ASN263
|
4.0
|
32.0
|
1.0
|
O
|
B:HOH723
|
4.1
|
53.0
|
1.0
|
O
|
B:HOH737
|
4.2
|
53.5
|
1.0
|
CZ
|
B:ARG369
|
4.4
|
36.8
|
1.0
|
S2
|
B:BME509
|
4.5
|
51.0
|
1.0
|
O
|
B:LEU371
|
4.6
|
31.7
|
1.0
|
C2
|
B:BME509
|
4.6
|
49.5
|
1.0
|
CD
|
B:LYS375
|
4.7
|
41.8
|
1.0
|
NH2
|
B:ARG369
|
4.8
|
39.2
|
1.0
|
O
|
B:HOH762
|
4.9
|
45.0
|
1.0
|
|
Reference:
G.Minasov,
E.V.Filippova,
A.Halavaty,
L.Shuvalova,
O.Kiryukhina,
M.Endres,
A.Joachimiak,
W.F.Anderson,
Midwest Center For Structural Genomics (Mcsg).
1.95 Angstrom Crystal Structure of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis. To Be Published.
Page generated: Sun Jul 21 17:18:55 2024
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