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Chlorine in PDB 4jcm: Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution

Enzymatic activity of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution:
2.4.1.19;

Protein crystallography data

The structure of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution, PDB code: 4jcm was solved by L.Wu, D.Yang, J.Zhou, J.Wu, J.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.65 / 1.65
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 205.736, 205.736, 43.504, 90.00, 90.00, 120.00
R / Rfree (%) 12.7 / 13.4

Other elements in 4jcm:

The structure of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution also contains other interesting chemical elements:

Calcium (Ca) 6 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution (pdb code 4jcm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution, PDB code: 4jcm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 13 in 4jcm

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Chlorine binding site 1 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl707

b:67.9
occ:1.00
 OE2 A:GLU440 3.2 46.1 0.5
NH1 A:ARG402 3.5 37.0 1.0
NH2 A:ARG402 3.7 31.5 1.0
CZ A:ARG402 4.1 32.4 1.0
CD A:LYS400 4.1 40.3 1.0
CE A:LYS400 4.3 55.2 1.0
CD A:GLU440 4.3 39.3 0.5
OE2 A:GLU440 4.4 44.2 0.5
NZ A:LYS400 4.7 62.1 1.0
CG A:GLU440 4.9 35.6 0.5
CG A:GLU440 4.9 34.6 0.5

Chlorine binding site 2 out of 13 in 4jcm

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Chlorine binding site 2 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl708

b:72.0
occ:1.00
 OG A:SER515 3.2 57.8 1.0
N A:SER515 3.5 33.4 1.0
O A:HOH1073 3.5 49.5 1.0
CA A:GLY514 3.8 30.8 1.0
C A:GLY514 4.1 31.6 1.0
CB A:SER515 4.2 44.8 1.0
CA A:SER515 4.5 34.8 1.0

Chlorine binding site 3 out of 13 in 4jcm

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Chlorine binding site 3 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl709

b:58.7
occ:1.00
 N A:ALA634 3.4 18.7 1.0
O A:HOH912 3.9 36.9 1.0
CA A:THR633 4.0 22.2 1.0
CB A:ALA634 4.0 21.7 1.0
CG2 A:THR633 4.2 27.5 1.0
C A:THR633 4.2 23.1 1.0
CA A:ALA634 4.3 19.2 1.0
NH1 A:ARG659 4.4 40.5 1.0
CB A:THR633 4.6 25.4 1.0
O A:ASP632 4.7 26.3 1.0
O A:HOH1071 4.8 57.3 1.0

Chlorine binding site 4 out of 13 in 4jcm

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Chlorine binding site 4 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl710

b:84.4
occ:1.00
 NH1 A:ARG669 3.5 30.8 1.0
CD A:ARG669 4.0 23.6 1.0
O A:HOH1201 4.0 47.3 1.0
CZ A:ARG669 4.4 29.9 1.0
NE A:ARG669 4.6 25.7 1.0
O4 A:SO4729 5.0 73.5 1.0

Chlorine binding site 5 out of 13 in 4jcm

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Chlorine binding site 5 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl711

b:73.3
occ:1.00
 O A:HOH1173 3.3 51.8 1.0
NZ A:LYS507 3.5 28.8 0.5
N A:LEU7 3.5 24.0 1.0
N A:SER8 3.7 23.4 1.0
C A:LEU7 3.7 25.9 1.0
CB A:LEU7 3.9 22.1 1.0
CA A:LEU7 3.9 22.3 1.0
CE A:LYS507 3.9 24.3 0.5
CA A:SER8 4.2 23.2 1.0
O A:LEU7 4.3 25.8 1.0
N A:ASP6 4.4 53.6 1.0
CB A:SER8 4.4 28.8 1.0
C A:ASP6 4.6 36.3 1.0
CB A:ASP6 4.7 49.2 1.0
CA A:ASP6 4.8 47.6 1.0
O1 A:EDO746 4.9 61.8 1.0
CG A:LEU7 4.9 23.8 1.0

Chlorine binding site 6 out of 13 in 4jcm

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Chlorine binding site 6 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl712

b:73.9
occ:1.00
 N A:GLY288 3.3 29.6 1.0
CA A:GLY288 4.0 33.9 1.0
C A:LYS287 4.4 32.3 1.0
CA A:LYS287 4.5 30.1 1.0
O4 A:SO4732 4.8 62.3 1.0
O A:GLN286 4.8 36.4 1.0
C A:GLY288 4.9 35.4 1.0
O A:GLY288 4.9 38.0 1.0

Chlorine binding site 7 out of 13 in 4jcm

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Chlorine binding site 7 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl713

b:60.0
occ:1.00
 O A:HOH1033 3.1 53.1 1.0
O A:HOH1220 3.7 45.1 1.0
NE1 A:TRP650 4.3 34.2 1.0
CZ2 A:TRP650 4.5 31.7 1.0
CG A:PRO605 4.6 34.7 1.0
CD A:PRO605 4.6 31.7 1.0
CE2 A:TRP650 4.7 29.7 1.0

Chlorine binding site 8 out of 13 in 4jcm

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Chlorine binding site 8 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl714

b:80.8
occ:1.00
 O A:HOH1215 3.5 48.8 1.0
O A:HOH1214 3.5 52.6 1.0
N A:ASN41 3.7 38.5 1.0
ND2 A:ASN41 3.7 60.8 1.0
CB A:ASN41 4.0 51.9 1.0
O A:PHE39 4.2 36.0 1.0
CG A:ASN41 4.4 61.3 1.0
CA A:ASN41 4.4 44.4 1.0
CA A:SER40 4.5 32.0 1.0
C A:SER40 4.6 37.5 1.0
C2 A:EDO747 4.6 62.4 1.0
O A:ASN41 4.9 50.3 1.0
O1 A:SO4721 5.0 86.2 1.0

Chlorine binding site 9 out of 13 in 4jcm

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Chlorine binding site 9 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl715

b:93.4
occ:1.00
 OD1 A:ASN590 3.6 41.1 1.0
O1 A:EDO744 4.4 70.1 1.0
CG A:ASN590 4.6 31.0 1.0
ND2 A:ASN590 4.8 29.1 1.0
C2 A:EDO744 5.0 66.9 1.0
O A:GLY588 5.0 34.2 1.0

Chlorine binding site 10 out of 13 in 4jcm

Go back to Chlorine Binding Sites List in 4jcm
Chlorine binding site 10 out of 13 in the Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl716

b:78.7
occ:1.00
 O A:HOH1276 2.8 51.6 1.0
O A:HOH929 2.9 37.2 1.0
NE2 A:HIS224 3.5 24.4 1.0
O A:HOH1138 4.1 45.6 1.0
CD2 A:HIS224 4.3 25.7 1.0
CB A:PHE250 4.5 26.4 1.0
O A:HOH811 4.5 22.2 1.0
CE1 A:HIS224 4.5 29.8 1.0
CD1 A:LEU185 4.8 36.7 1.0
OH A:TYR186 5.0 66.3 1.0

Reference:

L.Wu, D.Yang, J.Li, J.Zhou, J.Wu. The Crystal Structure of Gamma-Cgtase From Alkalophilic Bacillus Clarkii at 1.65 Angstrom Resolution. To Be Published.
Page generated: Sun Jul 21 17:21:04 2024

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