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Chlorine in PDB 4jna: Crystal Structure of the Deph Complex with Dimethyl-FK228

Protein crystallography data

The structure of Crystal Structure of the Deph Complex with Dimethyl-FK228, PDB code: 4jna was solved by J.Li, C.Wang, Z.M.Zhang, J.H.Zhou, E.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.98 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 154.283, 154.283, 71.828, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Deph Complex with Dimethyl-FK228 (pdb code 4jna). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Deph Complex with Dimethyl-FK228, PDB code: 4jna:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4jna

Go back to Chlorine Binding Sites List in 4jna
Chlorine binding site 1 out of 2 in the Crystal Structure of the Deph Complex with Dimethyl-FK228


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Deph Complex with Dimethyl-FK228 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:46.3
occ:1.00
N A:HIS176 3.0 26.5 1.0
N A:CYS177 3.0 29.3 1.0
CD2 A:HIS181 3.3 46.2 1.0
CA A:HIS176 3.6 27.6 1.0
CB A:HIS176 3.6 27.3 1.0
O A:HOH579 3.7 55.1 1.0
C7 A:FAD401 3.7 26.2 1.0
NE2 A:HIS181 3.7 50.4 1.0
C6 A:FAD401 3.8 25.9 1.0
C A:HIS176 3.8 31.0 1.0
CB A:PHE175 3.8 24.6 1.0
CB A:CYS177 3.9 34.8 1.0
CA A:CYS177 4.0 29.5 1.0
C8 A:FAD401 4.0 24.8 1.0
C A:PHE175 4.0 26.2 1.0
C5X A:FAD401 4.1 26.1 1.0
O A:CYS177 4.1 29.1 1.0
CA A:PHE175 4.1 21.8 1.0
C7M A:FAD401 4.2 29.6 1.0
C9 A:FAD401 4.3 21.5 1.0
C9A A:FAD401 4.3 23.0 1.0
C A:CYS177 4.5 26.5 1.0
CG A:HIS181 4.5 42.9 1.0
CD1 A:PHE175 4.5 39.7 1.0
CB A:CYS180 4.7 31.1 1.0
N5 A:FAD401 4.7 24.7 1.0
CG A:PHE175 4.7 32.9 1.0
C8M A:FAD401 4.7 23.5 1.0
CG A:HIS176 4.9 36.8 1.0

Chlorine binding site 2 out of 2 in 4jna

Go back to Chlorine Binding Sites List in 4jna
Chlorine binding site 2 out of 2 in the Crystal Structure of the Deph Complex with Dimethyl-FK228


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Deph Complex with Dimethyl-FK228 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:44.3
occ:1.00
N B:HIS176 3.0 31.3 1.0
N B:CYS177 3.1 30.9 1.0
CD2 B:HIS181 3.4 41.2 1.0
C7 B:FAD401 3.7 30.1 1.0
C6 B:FAD401 3.7 28.5 1.0
CA B:HIS176 3.7 31.1 1.0
CB B:HIS176 3.8 31.4 1.0
CB B:PHE175 3.8 34.4 1.0
C B:HIS176 3.9 30.8 1.0
C8 B:FAD401 4.0 29.8 1.0
CB B:CYS177 4.0 40.0 1.0
CA B:CYS177 4.0 34.4 1.0
C5X B:FAD401 4.0 30.2 1.0
C B:PHE175 4.0 30.5 1.0
O B:CYS177 4.1 31.4 1.0
NE2 B:HIS181 4.1 44.5 1.0
CA B:PHE175 4.1 31.2 1.0
C7M B:FAD401 4.2 35.4 1.0
C9 B:FAD401 4.2 26.5 1.0
C9A B:FAD401 4.2 27.4 1.0
C B:CYS177 4.5 31.1 1.0
CD1 B:PHE175 4.5 40.4 1.0
CB B:CYS180 4.5 31.9 1.0
CG B:HIS181 4.6 38.6 1.0
N5 B:FAD401 4.6 28.1 1.0
C8M B:FAD401 4.7 33.8 1.0
CG B:PHE175 4.7 43.1 1.0
CG B:HIS176 5.0 39.1 1.0

Reference:

J.Li, C.Wang, Z.M.Zhang, Y.Q.Cheng, J.Zhou. The Structural Basis of An Nadp+-Independent Dithiol Oxidase in FK228 Biosynthesis. Sci Rep V. 4 4145 2014.
ISSN: ESSN 2045-2322
PubMed: 24553401
DOI: 10.1038/SREP04145
Page generated: Sun Jul 21 17:35:07 2024

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