Chlorine in PDB 4k2j: Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain

The structure of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain, PDB code: 4k2j was solved by J.F.Domsic, R.Marmorstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.89 / 2.05
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.439, 175.176, 97.065, 90.00, 95.30, 90.00
R / Rfree (%)	18.2 / 22.6

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Chlorine atom in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain (pdb code 4k2j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 23 binding sites of Chlorine where determined in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain, PDB code: 4k2j:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1202 b:63.2 occ:1.00 H A:GLY1130 2.4 59.1 1.0 HH22 A:ARG1119 2.7 47.0 1.0 HA A:ALA1129 2.7 67.4 1.0 O A:HOH1333 3.0 43.2 1.0 N A:GLY1130 3.2 49.3 1.0 HA2 A:GLY1067 3.3 55.9 1.0 HA3 A:GLY1067 3.4 55.9 1.0 HB1 A:ALA1129 3.5 54.2 1.0 CA A:ALA1129 3.5 56.1 1.0 NH2 A:ARG1119 3.6 39.2 1.0 O A:HOH1331 3.6 52.0 1.0 HH12 A:ARG1119 3.6 50.6 1.0 CA A:GLY1067 3.8 46.5 1.0 CB A:ALA1129 3.9 45.2 1.0 C A:ALA1129 3.9 55.8 1.0 HZ1 A:LYS1070 4.0 78.3 1.0 HH21 A:ARG1119 4.0 47.0 1.0 HB2 A:ALA1129 4.1 54.2 1.0 HA3 A:GLY1130 4.1 56.9 1.0 HE3 A:LYS1070 4.2 71.6 1.0 CA A:GLY1130 4.3 47.4 1.0 NH1 A:ARG1119 4.3 42.1 1.0 CZ A:ARG1119 4.4 35.2 1.0 O A:GLY1067 4.5 40.0 1.0 C A:GLY1067 4.5 43.0 1.0 HE1 A:TRP1122 4.6 60.6 1.0 NZ A:LYS1070 4.6 65.3 1.0 N A:ALA1129 4.7 55.0 1.0 HZ2 A:LYS1070 4.8 78.3 1.0 HB3 A:ALA1129 4.8 54.2 1.0 O A:GLY1130 4.8 49.0 1.0 CE A:LYS1070 4.9 59.7 1.0 OD2 A:ASP1064 4.9 59.8 1.0 O A:LEU1128 5.0 63.2 1.0 HE22 A:GLN1034 5.0 50.2 1.0 N A:GLY1067 5.0 41.3 1.0 HE2 A:LYS1070 5.0 71.6 1.0

Chlorine binding site 2 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1203 b:43.2 occ:1.00 HE22 A:GLN1116 2.5 57.9 1.0 H A:ILE1136 2.6 50.5 1.0 HD3 B:LYS1141 2.7 82.6 1.0 HG12 A:ILE1136 2.7 59.3 1.0 HA A:SER1135 2.9 47.1 1.0 NE2 A:GLN1116 3.4 48.2 1.0 N A:ILE1136 3.4 42.1 1.0 HB3 B:LYS1140 3.4 57.6 1.0 O A:HOH1332 3.6 46.4 1.0 HB2 B:LYS1140 3.6 57.6 1.0 CD B:LYS1141 3.7 68.9 1.0 HG A:SER1135 3.7 47.7 1.0 CG1 A:ILE1136 3.7 49.4 1.0 HD2 B:LYS1140 3.7 93.2 1.0 HZ3 B:LYS1141 3.7 78.4 1.0 CA A:SER1135 3.8 39.2 1.0 HE21 A:GLN1116 3.8 57.9 1.0 HB2 B:LYS1141 3.9 51.3 1.0 HB A:ILE1136 4.0 56.0 1.0 CB B:LYS1140 4.0 48.0 1.0 HD2 B:LYS1141 4.0 82.6 1.0 C A:SER1135 4.1 46.0 1.0 HD13 A:ILE1136 4.2 62.2 1.0 CB A:ILE1136 4.2 46.7 1.0 CD A:GLN1116 4.2 51.9 1.0 HG13 A:ILE1136 4.3 59.3 1.0 OE1 A:GLN1116 4.3 50.2 1.0 OG A:SER1135 4.3 39.7 1.0 CD1 A:ILE1136 4.4 51.9 1.0 CA A:ILE1136 4.4 42.8 1.0 HD11 A:ILE1136 4.4 62.2 1.0 NZ B:LYS1141 4.4 65.4 1.0 O A:SER1134 4.5 38.6 1.0 HG2 B:LYS1141 4.5 70.1 1.0 CE B:LYS1141 4.5 74.7 1.0 CD B:LYS1140 4.5 77.7 1.0 HE2 B:LYS1141 4.5 89.6 1.0 CG B:LYS1141 4.5 58.4 1.0 CB A:SER1135 4.5 34.6 1.0 HD3 B:LYS1140 4.5 93.2 1.0 HB2 A:SER1135 4.6 41.5 1.0 CB B:LYS1141 4.6 42.8 1.0 HZ2 B:LYS1141 4.7 78.4 1.0 H B:LYS1141 4.7 45.7 1.0 N A:SER1135 4.8 35.5 1.0 CG B:LYS1140 4.9 70.4 1.0 N B:LYS1141 4.9 38.1 1.0 C A:SER1134 4.9 38.8 1.0 HA A:ILE1136 5.0 51.4 1.0

Chlorine binding site 3 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1201 b:42.7 occ:1.00 HE22 B:GLN1116 2.6 53.8 1.0 H B:ILE1136 2.6 45.2 1.0 HD2 A:LYS1141 2.7 76.8 1.0 HA B:SER1135 2.9 44.0 1.0 HG12 B:ILE1136 2.9 56.2 1.0 HD3 A:LYS1140 3.0 57.6 1.0 HG3 A:LYS1141 3.1 65.0 1.0 HB3 A:LYS1140 3.1 52.8 1.0 O B:HOH1347 3.4 56.7 1.0 NE2 B:GLN1116 3.4 44.8 1.0 N B:ILE1136 3.4 37.6 1.0 HG2 A:LYS1140 3.5 64.4 1.0 CD A:LYS1141 3.5 64.0 1.0 HD3 A:LYS1141 3.7 76.8 1.0 CG A:LYS1141 3.7 54.1 1.0 HG B:SER1135 3.8 50.5 1.0 CA B:SER1135 3.8 36.7 1.0 CD A:LYS1140 3.8 48.0 1.0 CG1 B:ILE1136 3.8 46.8 1.0 CB A:LYS1140 3.8 44.0 1.0 CG A:LYS1140 3.9 53.7 1.0 HE21 B:GLN1116 3.9 53.8 1.0 HB B:ILE1136 4.0 53.0 1.0 C B:SER1135 4.1 39.4 1.0 OE1 B:GLN1116 4.2 49.1 1.0 HG2 A:LYS1141 4.2 65.0 1.0 CD B:GLN1116 4.2 47.2 1.0 HB2 A:LYS1140 4.3 52.8 1.0 CB B:ILE1136 4.3 44.1 1.0 OG B:SER1135 4.4 42.1 1.0 HG13 B:ILE1136 4.4 56.2 1.0 HD13 B:ILE1136 4.4 48.8 1.0 O B:SER1134 4.4 44.4 1.0 HE2 A:LYS1140 4.4 69.0 1.0 CA B:ILE1136 4.4 35.9 1.0 HZ2 A:LYS1141 4.5 68.8 1.0 HD2 A:LYS1140 4.5 57.6 1.0 CB B:SER1135 4.6 38.1 1.0 CD1 B:ILE1136 4.6 40.7 1.0 H A:LYS1141 4.6 50.0 1.0 HD11 B:ILE1136 4.6 48.8 1.0 CE A:LYS1141 4.7 66.5 1.0 HB2 B:SER1135 4.7 45.7 1.0 CE A:LYS1140 4.7 57.5 1.0 N B:SER1135 4.7 37.2 1.0 HG3 A:LYS1140 4.8 64.4 1.0 HB2 A:LYS1141 4.8 51.9 1.0 N A:LYS1141 4.8 41.6 1.0 CB A:LYS1141 4.9 43.3 1.0 NZ A:LYS1141 4.9 57.4 1.0 HZ3 A:LYS1141 4.9 68.8 1.0 C B:SER1134 4.9 38.0 1.0 HZ3 A:LYS1140 5.0 84.6 1.0

Chlorine binding site 4 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1202 b:66.8 occ:1.00 HH11 B:ARG1048 2.4 68.0 1.0 HE1 B:TRP1054 2.5 48.8 1.0 HD3 B:ARG1048 2.7 69.7 1.0 HA B:THR1146 2.8 64.2 1.0 HA B:PRO1050 2.9 91.6 1.0 HG22 B:THR1146 3.0 44.5 1.0 HE22 B:GLN1107 3.1 65.8 1.0 HE21 B:GLN1107 3.2 65.8 1.0 NH1 B:ARG1048 3.2 56.6 1.0 NE1 B:TRP1054 3.4 40.7 1.0 NE2 B:GLN1107 3.4 54.9 1.0 H B:GLN1147 3.5 65.7 1.0 HG3 B:ARG1048 3.5 59.2 1.0 HH12 B:ARG1048 3.6 68.0 1.0 CD B:ARG1048 3.6 58.0 1.0 HG2 B:ARG1048 3.7 59.2 1.0 CA B:THR1146 3.7 53.5 1.0 CG B:ARG1048 3.8 49.3 1.0 CG2 B:THR1146 3.9 37.0 1.0 CA B:PRO1050 3.9 76.4 1.0 HZ2 B:TRP1054 4.2 45.5 1.0 HB B:THR1146 4.2 52.0 1.0 CB B:THR1146 4.2 43.4 1.0 HG23 B:THR1146 4.2 44.5 1.0 HD1 B:TRP1054 4.2 43.1 1.0 N B:GLN1147 4.2 54.8 1.0 CD1 B:TRP1054 4.2 35.9 1.0 CZ B:ARG1048 4.2 56.2 1.0 HD2 B:ARG1048 4.2 69.7 1.0 O B:CYS1052 4.2 64.6 1.0 O B:ASP1049 4.3 67.2 1.0 CE2 B:TRP1054 4.4 36.3 1.0 NE B:ARG1048 4.4 49.0 1.0 O B:PRO1050 4.4 76.2 1.0 HB3 B:PRO1050 4.4 97.4 1.0 HB2 B:GLN1147 4.5 87.2 1.0 O B:LEU1145 4.5 42.1 1.0 HG21 B:THR1146 4.5 44.5 1.0 C B:THR1146 4.6 54.9 1.0 C B:PRO1050 4.6 77.9 1.0 N B:PRO1050 4.6 69.6 1.0 CD B:GLN1107 4.6 47.8 1.0 N B:THR1146 4.6 45.2 1.0 CZ2 B:TRP1054 4.7 37.9 1.0 C B:ASP1049 4.7 61.7 1.0 CB B:PRO1050 4.8 81.1 1.0 C B:LEU1145 4.9 43.0 1.0 H B:CYS1052 4.9 89.4 1.0 H B:ASP1049 5.0 70.6 1.0

Chlorine binding site 5 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1203 b:42.4 occ:1.00 HD3 D:LYS1141 2.3 85.9 1.0 HE22 C:GLN1116 2.4 63.5 1.0 H C:ILE1136 2.6 42.3 1.0 HG12 C:ILE1136 2.8 67.1 1.0 HA C:SER1135 2.9 50.1 1.0 HD2 D:LYS1141 3.1 85.9 1.0 HD3 D:LYS1140 3.1 70.7 1.0 CD D:LYS1141 3.1 71.6 1.0 HB3 D:LYS1140 3.1 51.2 1.0 NE2 C:GLN1116 3.2 52.9 1.0 HG2 D:LYS1140 3.2 66.1 1.0 N C:ILE1136 3.4 35.2 1.0 HE21 C:GLN1116 3.5 63.5 1.0 HZ3 D:LYS1141 3.6 70.3 1.0 CG1 C:ILE1136 3.7 56.0 1.0 CG D:LYS1140 3.8 55.0 1.0 HB C:ILE1136 3.8 58.9 1.0 CA C:SER1135 3.8 41.8 1.0 CD D:LYS1140 3.8 58.9 1.0 HG C:SER1135 3.9 47.3 1.0 HZ2 D:LYS1141 3.9 70.3 1.0 CB D:LYS1140 3.9 42.7 1.0 HG13 C:ILE1136 3.9 67.1 1.0 HG3 D:LYS1141 3.9 61.7 1.0 HB2 D:LYS1141 4.0 61.0 1.0 NZ D:LYS1141 4.0 58.6 1.0 CG D:LYS1141 4.1 51.4 1.0 C C:SER1135 4.1 42.5 1.0 CB C:ILE1136 4.1 49.1 1.0 CE D:LYS1141 4.2 69.1 1.0 CD C:GLN1116 4.3 52.8 1.0 HB2 D:LYS1140 4.3 51.2 1.0 OG C:SER1135 4.4 39.4 1.0 CA C:ILE1136 4.4 39.1 1.0 O C:SER1134 4.4 42.2 1.0 HE2 D:LYS1140 4.5 85.5 1.0 OE1 C:GLN1116 4.5 43.0 1.0 HD2 D:LYS1140 4.5 70.7 1.0 CB D:LYS1141 4.5 50.9 1.0 CB C:SER1135 4.6 40.2 1.0 H D:LYS1141 4.6 52.0 1.0 HB2 C:SER1135 4.6 48.2 1.0 HE2 D:LYS1141 4.6 83.0 1.0 HG3 D:LYS1140 4.7 66.1 1.0 N C:SER1135 4.7 40.9 1.0 CE D:LYS1140 4.7 71.2 1.0 N D:LYS1141 4.8 43.3 1.0 CD1 C:ILE1136 4.8 50.0 1.0 HE3 D:LYS1141 4.9 83.0 1.0 HD11 C:ILE1136 4.9 60.1 1.0 HZ1 D:LYS1141 4.9 70.3 1.0 C C:SER1134 4.9 41.3 1.0 HG2 D:LYS1141 4.9 61.7 1.0 HD13 C:ILE1136 5.0 60.1 1.0 HZ3 D:LYS1140 5.0 89.2 1.0

Chlorine binding site 6 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1204 b:70.5 occ:1.00 HE1 C:TRP1054 2.4 63.9 1.0 HG22 C:THR1146 2.6 72.8 1.0 HD3 C:ARG1048 2.7 77.6 1.0 HH11 C:ARG1048 2.9 80.4 1.0 O C:HOH1325 3.1 56.5 1.0 HA C:THR1146 3.1 73.1 1.0 HE22 C:GLN1107 3.3 80.4 1.0 NE1 C:TRP1054 3.3 53.3 1.0 HE21 C:GLN1107 3.3 80.4 1.0 CG2 C:THR1146 3.5 60.7 1.0 CD C:ARG1048 3.5 64.7 1.0 HG2 C:ARG1048 3.6 73.9 1.0 NE2 C:GLN1107 3.6 67.0 1.0 HG23 C:THR1146 3.7 72.8 1.0 HG3 C:ARG1048 3.7 73.9 1.0 NH1 C:ARG1048 3.8 67.0 1.0 CG C:ARG1048 3.8 61.6 1.0 HD2 C:ARG1048 4.0 77.6 1.0 CA C:THR1146 4.0 60.9 1.0 HD1 C:TRP1054 4.0 71.1 1.0 CD1 C:TRP1054 4.1 59.3 1.0 HG21 C:THR1146 4.1 72.8 1.0 HA C:PRO1050 4.2 0.6 1.0 HZ2 C:TRP1054 4.2 64.2 1.0 HH12 C:ARG1048 4.2 80.4 1.0 CB C:THR1146 4.3 63.1 1.0 CE2 C:TRP1054 4.3 53.5 1.0 H C:GLN1147 4.4 82.3 1.0 O C:ASP1049 4.4 78.8 1.0 HB C:THR1146 4.4 75.7 1.0 O C:CYS1052 4.5 69.1 1.0 NE C:ARG1048 4.5 68.2 1.0 O C:LEU1145 4.5 54.4 1.0 O C:PRO1050 4.6 93.3 1.0 CZ C:ARG1048 4.6 65.7 1.0 CZ2 C:TRP1054 4.7 53.5 1.0 CD C:GLN1107 4.8 65.5 1.0 N C:THR1146 4.8 58.9 1.0 N C:GLN1147 4.9 68.6 1.0

Chlorine binding site 7 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl1201 b:41.1 occ:1.00 HE22 D:GLN1116 2.5 46.3 1.0 H D:ILE1136 2.6 44.1 1.0 HE3 C:LYS1141 2.8 88.4 1.0 HA D:SER1135 2.9 43.5 1.0 HG12 D:ILE1136 3.0 53.8 1.0 HG3 C:LYS1141 3.0 56.2 1.0 HD3 C:LYS1140 3.0 85.5 1.0 HB3 C:LYS1140 3.1 55.9 1.0 NE2 D:GLN1116 3.3 38.6 1.0 N D:ILE1136 3.4 36.8 1.0 HD2 C:LYS1141 3.4 80.4 1.0 HG13 D:ILE1136 3.4 53.8 1.0 CG1 D:ILE1136 3.6 44.9 1.0 CE C:LYS1141 3.6 73.7 1.0 HE21 D:GLN1116 3.7 46.3 1.0 HB D:ILE1136 3.8 57.8 1.0 HG D:SER1135 3.8 52.1 1.0 CD C:LYS1141 3.8 67.0 1.0 CG C:LYS1141 3.8 46.9 1.0 CA D:SER1135 3.8 36.3 1.0 CD C:LYS1140 3.9 71.3 1.0 CB C:LYS1140 4.0 46.6 1.0 HD2 C:LYS1140 4.0 85.5 1.0 HZ2 C:LYS1141 4.1 96.1 1.0 CB D:ILE1136 4.1 48.2 1.0 C D:SER1135 4.1 38.1 1.0 CD D:GLN1116 4.2 42.1 1.0 OE1 D:GLN1116 4.2 39.2 1.0 HB2 C:LYS1140 4.3 55.9 1.0 CG C:LYS1140 4.3 57.5 1.0 HG2 C:LYS1140 4.3 69.0 1.0 HE2 C:LYS1141 4.3 88.4 1.0 NZ C:LYS1141 4.4 80.1 1.0 CA D:ILE1136 4.4 35.4 1.0 OG D:SER1135 4.4 43.5 1.0 HG2 C:LYS1141 4.4 56.2 1.0 HB2 C:LYS1141 4.5 57.8 1.0 O D:SER1134 4.5 40.3 1.0 H C:LYS1141 4.5 49.0 1.0 HZ1 C:LYS1141 4.6 96.1 1.0 CB D:SER1135 4.6 38.8 1.0 N D:SER1135 4.7 41.3 1.0 HD3 C:LYS1141 4.7 80.4 1.0 CB C:LYS1141 4.7 48.2 1.0 N C:LYS1141 4.8 40.8 1.0 HB2 D:SER1135 4.8 46.5 1.0 CD1 D:ILE1136 4.9 47.3 1.0 HD11 D:ILE1136 4.9 56.8 1.0 C D:SER1134 4.9 43.5 1.0 HA D:ILE1136 5.0 42.5 1.0

Chlorine binding site 8 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl1203 b:35.1 occ:1.00 HE22 E:GLN1116 2.4 50.5 1.0 H E:ILE1136 2.5 39.2 1.0 HG12 E:ILE1136 2.8 50.9 1.0 HD3 F:LYS1140 2.8 52.6 1.0 HA E:SER1135 2.8 43.1 1.0 HG3 F:LYS1141 2.8 61.6 1.0 HE3 F:LYS1141 2.9 76.7 1.0 HB3 F:LYS1140 3.1 41.7 1.0 O E:HOH1351 3.2 48.0 1.0 NE2 E:GLN1116 3.2 42.1 1.0 N E:ILE1136 3.4 32.7 1.0 HZ2 F:LYS1141 3.5 58.1 1.0 HE21 E:GLN1116 3.6 50.5 1.0 CG1 E:ILE1136 3.7 42.4 1.0 CD F:LYS1140 3.7 43.9 1.0 CA E:SER1135 3.7 35.9 1.0 CE F:LYS1141 3.7 63.9 1.0 CG F:LYS1141 3.8 51.4 1.0 HG E:SER1135 3.8 37.5 1.0 CB F:LYS1140 3.9 34.8 1.0 NZ F:LYS1141 4.0 48.5 1.0 HG13 E:ILE1136 4.0 50.9 1.0 HB E:ILE1136 4.0 53.9 1.0 C E:SER1135 4.0 33.8 1.0 HZ1 F:LYS1141 4.1 58.1 1.0 HD2 F:LYS1140 4.1 52.6 1.0 HG2 F:LYS1140 4.1 47.7 1.0 CG F:LYS1140 4.2 39.7 1.0 CD E:GLN1116 4.2 44.8 1.0 HG2 F:LYS1141 4.2 61.6 1.0 CD F:LYS1141 4.2 58.9 1.0 OE1 E:GLN1116 4.2 40.9 1.0 CB E:ILE1136 4.3 44.9 1.0 HB2 F:LYS1140 4.3 41.7 1.0 OG E:SER1135 4.3 31.3 1.0 H F:LYS1141 4.4 47.3 1.0 O E:SER1134 4.4 36.2 1.0 CA E:ILE1136 4.4 31.3 1.0 HD2 F:LYS1141 4.4 70.6 1.0 HB2 F:LYS1141 4.5 46.4 1.0 CB E:SER1135 4.5 35.2 1.0 HE2 F:LYS1141 4.5 76.7 1.0 HE2 F:LYS1140 4.5 70.2 1.0 HB2 E:SER1135 4.5 42.3 1.0 HD11 E:ILE1136 4.6 60.7 1.0 CD1 E:ILE1136 4.6 50.6 1.0 N F:LYS1141 4.7 39.4 1.0 CB F:LYS1141 4.7 38.7 1.0 N E:SER1135 4.7 29.9 1.0 HD13 E:ILE1136 4.7 60.7 1.0 CE F:LYS1140 4.8 58.5 1.0 HZ3 F:LYS1141 4.8 58.1 1.0 C E:SER1134 4.9 35.6 1.0 C F:LYS1140 5.0 40.0 1.0

Chlorine binding site 9 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl1204 b:50.5 occ:1.00 H E:VAL1085 2.4 34.7 1.0 O F:HOH1334 3.0 50.1 1.0 HG23 E:VAL1085 3.0 34.0 1.0 HA E:PRO1084 3.0 35.9 1.0 O E:HOH1336 3.1 47.1 1.0 N E:VAL1085 3.2 29.0 1.0 HZ3 E:LYS1069 3.2 68.0 1.0 HB2 E:PRO1084 3.3 35.6 1.0 O E:HOH1338 3.4 41.0 1.0 HB3 E:PRO1084 3.4 35.6 1.0 HB E:VAL1085 3.4 35.2 1.0 HG3 E:LYS1069 3.5 35.1 1.0 CB E:PRO1084 3.6 29.6 1.0 CA E:PRO1084 3.6 29.9 1.0 HE22 E:GLN1015 3.8 40.7 1.0 CG2 E:VAL1085 3.8 28.4 1.0 C E:PRO1084 3.9 29.6 1.0 HZ1 E:LYS1069 3.9 68.0 1.0 CB E:VAL1085 3.9 29.3 1.0 NZ E:LYS1069 4.0 56.7 1.0 HE2 E:LYS1069 4.1 64.1 1.0 NE2 E:GLN1015 4.1 33.9 1.0 HG21 E:VAL1085 4.1 34.0 1.0 CA E:VAL1085 4.1 24.8 1.0 HG E:SER1072 4.2 37.6 1.0 HE21 E:GLN1015 4.3 40.7 1.0 CG E:LYS1069 4.4 29.3 1.0 CE E:LYS1069 4.5 53.5 1.0 HG22 E:VAL1085 4.6 34.0 1.0 O E:VAL1085 4.7 34.8 1.0 HZ2 E:LYS1069 4.7 68.0 1.0 HA E:LYS1069 4.7 34.0 1.0 HG2 E:LYS1069 4.7 35.1 1.0 HG3 E:PRO1018 4.7 39.6 1.0 CD E:GLN1015 4.8 37.8 1.0 HA E:VAL1085 4.9 29.7 1.0 O F:HOH1310 4.9 39.4 1.0 C E:VAL1085 4.9 32.2 1.0 HB3 E:SER1072 4.9 32.3 1.0 OG E:SER1072 5.0 31.3 1.0 N E:PRO1084 5.0 29.4 1.0

Chlorine binding site 10 out of 23 in the Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Decameric Ring Structure of Kshv (Hhv-8) Latency-Associated Nuclear Antigen (Lana) Dna Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl1205 b:56.2 occ:1.00 H E:LEU1128 2.4 47.9 1.0 HB3 E:HIS1126 2.6 49.6 1.0 HB2 E:LEU1128 2.7 66.3 1.0 HD2 E:PRO1127 3.0 55.1 1.0 HA E:HIS1126 3.0 44.8 1.0 HD12 E:LEU1128 3.2 75.7 1.0 HG E:LEU1128 3.2 72.5 1.0 N E:LEU1128 3.2 39.9 1.0 CB E:HIS1126 3.4 41.4 1.0 N E:PRO1127 3.4 42.0 1.0 CA E:HIS1126 3.5 37.3 1.0 CB E:LEU1128 3.5 55.3 1.0 HD1 E:HIS1126 3.5 51.7 1.0 C E:HIS1126 3.5 43.6 1.0 CD E:PRO1127 3.6 45.9 1.0 CG E:LEU1128 3.7 60.4 1.0 CD1 E:LEU1128 3.9 63.1 1.0 CA E:LEU1128 3.9 51.2 1.0 O E:HOH1369 3.9 52.3 1.0 HB2 E:HIS1126 4.0 49.6 1.0 ND1 E:HIS1126 4.1 43.1 1.0 H E:ALA1129 4.1 46.6 1.0 HD3 E:PRO1127 4.1 55.1 1.0 CG E:HIS1126 4.2 38.3 1.0 C E:PRO1127 4.2 45.4 1.0 O E:HIS1126 4.2 43.6 1.0 HB3 E:LEU1128 4.3 66.3 1.0 CA E:PRO1127 4.3 45.3 1.0 HD11 E:LEU1128 4.4 75.7 1.0 HB2 E:PRO1127 4.4 59.4 1.0 HD13 E:LEU1128 4.5 75.7 1.0 N E:ALA1129 4.6 38.8 1.0 C E:LEU1128 4.6 43.5 1.0 HA E:LEU1128 4.7 61.4 1.0 CB E:PRO1127 4.7 49.5 1.0 CG E:PRO1127 4.8 45.3 1.0 N E:HIS1126 4.9 35.9 1.0

J.F.Domsic, H.S.Chen, F.Lu, R.Marmorstein, P.M.Lieberman. Molecular Basis For Oligomeric-Dna Binding and Episome Maintenance By Kshv Lana. Plos Pathog. V. 9 03672 2013.
ISSN: ISSN 1553-7366
PubMed: 24146617
DOI: 10.1371/JOURNAL.PPAT.1003672