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Chlorine in PDB 4k6o: X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution

Enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution

All present enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution, PDB code: 4k6o was solved by I.I.Prokofev, A.A.Lashkov, A.G.Gabdoulkhakov, C.Betzel, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.28 / 1.17
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.012, 97.100, 93.017, 90.00, 119.99, 90.00
R / Rfree (%) 10.8 / 12.8

Other elements in 4k6o:

The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 16 atoms
Sodium (Na) 4 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution (pdb code 4k6o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution, PDB code: 4k6o:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 4k6o

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Chlorine binding site 1 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:29.2
occ:1.00
H A:SER45 2.3 11.4 0.3
H A:SER45 2.3 11.4 0.7
HA A:ALA44 2.7 11.7 1.0
O A:HOH665 2.9 38.2 1.0
O A:HOH572 3.0 26.4 1.0
N A:SER45 3.1 9.5 1.0
HG A:SER45 3.2 15.3 0.3
O A:HOH671 3.3 31.9 1.0
HZ A:PHE42 3.3 14.9 1.0
CA A:ALA44 3.5 9.7 1.0
HB1 A:ALA44 3.6 13.6 1.0
O A:SER45 3.6 12.7 1.0
C A:ALA44 3.8 8.9 1.0
O A:HOH794 3.8 43.7 1.0
HE1 A:HIS46 3.9 18.4 0.5
OG A:SER45 3.9 12.8 0.3
CB A:ALA44 4.0 11.3 1.0
HE2 A:PHE42 4.0 14.5 1.0
CZ A:PHE42 4.0 12.4 1.0
CE1 A:HIS46 4.1 15.3 0.5
HB3 A:SER45 4.1 15.0 0.7
CA A:SER45 4.1 10.8 0.3
CA A:SER45 4.1 10.9 0.7
HB2 A:ALA44 4.2 13.6 1.0
C A:SER45 4.3 11.8 1.0
CE2 A:PHE42 4.3 12.1 1.0
NE2 A:HIS46 4.4 16.1 0.5
O A:HOH772 4.4 44.9 1.0
HE2 A:HIS46 4.4 19.3 0.5
CB A:SER45 4.6 11.7 0.3
O A:LEU43 4.6 13.1 1.0
CB A:SER45 4.6 12.5 0.7
N A:ALA44 4.7 9.4 1.0
ND1 A:HIS46 4.7 14.2 0.5
HB3 A:ALA44 4.9 13.6 1.0
O A:HOH656 4.9 35.6 1.0
HD1 A:HIS46 4.9 17.1 0.5
HA A:SER45 5.0 13.0 0.3
HA A:SER45 5.0 13.1 0.7
O A:ALA44 5.0 9.7 1.0
HB3 A:SER45 5.0 14.0 0.3
HB2 A:SER45 5.0 15.0 0.7

Chlorine binding site 2 out of 12 in 4k6o

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Chlorine binding site 2 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:15.8
occ:0.66
O A:HOH491 2.5 17.8 1.0
H A:ASP26 2.6 10.8 1.0
H A:GLY25 2.6 9.5 1.0
O B:HOH531 2.7 23.7 1.0
O A:HOH478 3.0 18.6 1.0
HG3 A:ARG29 3.1 20.7 1.0
HB2 A:PRO24 3.1 9.7 1.0
N A:GLY25 3.3 7.9 1.0
O A:HOH612 3.3 37.8 1.0
HB3 A:ASP26 3.4 12.9 1.0
N A:ASP26 3.4 9.0 1.0
HH22 B:ARG47 3.5 17.8 0.6
HA2 A:GLY92 3.5 14.5 0.4
HB2 A:ASP26 3.6 12.9 1.0
HA2 A:GLY92 3.6 11.6 0.6
HA3 A:GLY25 3.9 10.3 1.0
CB A:ASP26 3.9 10.7 1.0
CB A:PRO24 3.9 8.1 1.0
CA A:GLY25 4.0 8.6 1.0
NH2 B:ARG47 4.0 14.8 0.6
HB3 A:PRO24 4.0 9.7 1.0
HA A:PRO24 4.0 9.0 1.0
CG A:ARG29 4.0 17.3 1.0
HB2 A:ARG29 4.1 16.3 1.0
C A:PRO24 4.2 7.4 1.0
C A:GLY25 4.2 8.8 1.0
HH21 B:ARG47 4.2 17.8 0.6
HE A:ARG29 4.2 23.5 1.0
CA A:PRO24 4.2 7.5 1.0
O A:VAL91 4.2 8.8 1.0
HA3 A:GLY92 4.2 14.5 0.4
CA A:ASP26 4.3 9.3 1.0
CA A:GLY92 4.3 12.1 0.4
HA3 A:GLY92 4.3 11.6 0.6
O A:HOH592 4.4 19.2 0.7
H A:THR93 4.4 13.5 0.4
CA A:GLY92 4.4 9.6 0.6
HG2 A:ARG29 4.5 20.7 1.0
O A:HOH477 4.5 17.5 1.0
CB A:ARG29 4.5 13.6 1.0
HH12 B:ARG47 4.6 15.8 0.6
HB3 A:ARG29 4.6 16.3 1.0
HG23 A:THR93 4.7 14.7 0.4
HH12 B:ARG47 4.7 17.2 0.4
HG13 A:VAL91 4.7 10.2 1.0
CZ B:ARG47 4.8 13.8 0.6
NE A:ARG29 4.9 19.6 1.0
O A:HOH625 4.9 30.5 1.0
H A:THR93 4.9 8.5 0.6
HA2 A:GLY25 4.9 10.3 1.0
O A:ASP26 4.9 9.1 1.0
CD A:ARG29 4.9 19.3 1.0
NH1 B:ARG47 4.9 14.3 0.4

Chlorine binding site 3 out of 12 in 4k6o

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Chlorine binding site 3 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:21.4
occ:0.97
H A:PHE133 2.3 6.7 1.0
O F:HOH440 2.4 5.3 0.6
O A:HOH602 2.6 28.9 1.0
HG21 F:THR110 2.8 10.0 1.0
HB2 A:PHE133 2.9 7.7 1.0
HG1 F:THR110 3.0 9.0 1.0
HA A:ASP132 3.1 6.0 1.0
O A:HOH519 3.1 15.8 1.0
N A:PHE133 3.1 5.5 1.0
HA2 F:GLY153 3.3 6.5 1.0
O F:HOH440 3.4 14.3 0.4
HB2 F:MET152 3.6 7.7 1.0
CB A:PHE133 3.6 6.4 1.0
HB3 A:PHE133 3.7 7.7 1.0
CG2 F:THR110 3.7 8.3 1.0
HB3 F:MET152 3.7 7.7 1.0
O F:MET152 3.8 7.6 1.0
OG1 F:THR110 3.8 7.5 1.0
CA A:ASP132 3.9 5.0 1.0
CA A:PHE133 4.0 5.8 1.0
HG23 F:THR110 4.0 10.0 1.0
C A:ASP132 4.0 5.1 1.0
C F:MET152 4.0 5.9 1.0
CB F:MET152 4.1 6.4 1.0
CA F:GLY153 4.1 5.5 1.0
O F:HOH612 4.1 32.2 1.0
OD1 A:ASP132 4.1 8.2 1.0
CB F:THR110 4.2 7.1 1.0
O A:PRO131 4.2 5.5 1.0
O A:HOH461 4.2 12.4 1.0
HB F:THR110 4.2 8.5 1.0
N F:GLY153 4.2 5.6 1.0
HG22 F:THR110 4.3 10.0 1.0
HA A:PHE133 4.4 7.0 1.0
HA3 F:GLY153 4.5 6.5 1.0
CG A:ASP132 4.6 6.8 1.0
O A:HOH493 4.6 17.4 1.0
O F:HOH456 4.6 13.1 1.0
O A:HOH425 4.7 7.8 1.0
CA F:MET152 4.7 5.8 1.0
H A:ASP134 4.7 7.5 1.0
H F:GLY153 4.8 6.7 1.0
CB A:ASP132 4.8 6.5 1.0
MG A:MG305 4.8 13.7 0.7
N A:ASP132 4.9 4.9 1.0
CG A:PHE133 4.9 7.2 1.0
C A:PRO131 5.0 4.9 1.0
HB2 A:ASP132 5.0 7.8 1.0

Chlorine binding site 4 out of 12 in 4k6o

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Chlorine binding site 4 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:19.6
occ:0.58
O B:HOH733 2.2 29.9 0.7
H B:GLY25 2.5 11.7 1.0
H B:ASP26 2.7 14.1 1.0
HG3 B:ARG29 2.8 23.8 1.0
O B:HOH543 3.0 19.9 1.0
O B:HOH646 3.1 41.4 1.0
O A:HOH775 3.1 41.1 1.0
HB2 B:PRO24 3.2 9.9 1.0
N B:GLY25 3.2 9.7 1.0
HH22 A:ARG47 3.3 25.4 0.8
HB3 B:ASP26 3.4 18.6 1.0
HA2 B:GLY92 3.5 13.0 0.8
N B:ASP26 3.5 11.8 1.0
HA2 B:GLY92 3.6 12.0 0.2
CG B:ARG29 3.7 19.8 1.0
HA3 B:GLY25 3.7 12.4 1.0
HB2 B:ASP26 3.8 18.6 1.0
NH2 A:ARG47 3.8 21.2 0.8
CA B:GLY25 3.9 10.3 1.0
HE B:ARG29 3.9 25.9 1.0
CB B:PRO24 4.0 8.3 1.0
HH21 A:ARG47 4.0 25.4 0.8
CB B:ASP26 4.0 15.5 1.0
HA B:PRO24 4.0 9.8 1.0
HB3 B:PRO24 4.1 9.9 1.0
C B:PRO24 4.2 8.5 1.0
HG2 B:ARG29 4.2 23.8 1.0
O B:HOH550 4.2 28.2 1.0
O B:VAL91 4.2 8.9 1.0
HB2 B:ARG29 4.2 20.6 1.0
C B:GLY25 4.2 10.4 1.0
HH21 A:ARG47 4.2 17.7 0.2
CA B:PRO24 4.2 8.1 1.0
HD3 B:ARG29 4.3 25.1 1.0
HA3 B:GLY92 4.3 13.0 0.8
CA B:GLY92 4.3 10.8 0.8
HA3 B:GLY92 4.3 12.0 0.2
CA B:ASP26 4.4 13.3 1.0
CA B:GLY92 4.4 10.0 0.2
CD B:ARG29 4.4 20.9 1.0
CB B:ARG29 4.5 17.1 1.0
HH12 A:ARG47 4.5 21.8 0.8
NE B:ARG29 4.5 21.6 1.0
NH2 A:ARG47 4.6 14.7 0.2
HB3 B:ARG29 4.6 20.6 1.0
CZ A:ARG47 4.7 20.0 0.8
HH22 A:ARG47 4.7 17.7 0.2
H B:THR93 4.7 11.9 0.2
HG13 B:VAL91 4.7 11.3 1.0
HA2 B:GLY25 4.8 12.4 1.0
H B:THR93 4.9 11.9 0.8
NH1 A:ARG47 4.9 18.1 0.8

Chlorine binding site 5 out of 12 in 4k6o

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Chlorine binding site 5 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:11.3
occ:1.00
H B:ASN221 2.4 8.5 1.0
O B:HOH593 3.0 31.6 1.0
HA B:ILE220 3.0 8.7 1.0
HE2 B:LYS225 3.0 19.0 1.0
HG13 B:ILE220 3.0 10.3 1.0
O B:HOH693 3.2 36.1 1.0
N B:ASN221 3.2 7.1 1.0
HB2 B:GLN224 3.3 11.3 1.0
O B:HOH496 3.4 17.8 0.8
HG21 B:VAL103 3.5 17.5 1.0
HG2 B:LYS225 3.6 13.1 1.0
HB3 B:ASN221 3.7 9.6 1.0
HG23 B:VAL103 3.8 17.5 1.0
CA B:ILE220 3.8 7.2 1.0
HG3 B:GLN224 3.9 13.5 1.0
CG1 B:ILE220 3.9 8.6 1.0
CE B:LYS225 3.9 15.8 1.0
O B:ASN221 4.0 6.7 1.0
H21 B:EDO309 4.0 23.6 0.5
CG2 B:VAL103 4.0 14.6 1.0
C B:ILE220 4.0 6.7 1.0
CB B:GLN224 4.1 9.4 1.0
HB3 B:GLN224 4.1 11.3 1.0
HG12 B:ILE220 4.1 10.3 1.0
CA B:ASN221 4.2 6.7 1.0
HG22 B:VAL103 4.2 17.5 1.0
HE3 B:LYS225 4.3 19.0 1.0
CB B:ASN221 4.3 8.0 1.0
HB2 B:ASN221 4.3 9.6 1.0
CB B:ILE220 4.4 7.6 1.0
CG B:LYS225 4.4 10.9 1.0
CG B:GLN224 4.5 11.3 1.0
C B:ASN221 4.5 6.7 1.0
CD B:LYS225 4.6 13.3 1.0
HD3 B:LYS225 4.6 16.0 1.0
HB B:ILE220 4.7 9.1 1.0
HG3 B:LYS225 4.7 13.1 1.0
HZ1 B:LYS225 4.8 22.6 1.0
O B:HOH484 4.8 24.0 1.0
NZ B:LYS225 4.9 18.8 1.0
HZ3 B:LYS225 4.9 22.6 1.0
HG2 B:GLN224 4.9 13.5 1.0
O B:ILE219 4.9 8.8 1.0
N B:ILE220 5.0 7.3 1.0
O B:HOH591 5.0 30.4 1.0

Chlorine binding site 6 out of 12 in 4k6o

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Chlorine binding site 6 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:15.5
occ:0.47
H C:GLY25 2.4 11.7 1.0
H C:ASP26 2.7 14.9 1.0
HD3 C:ARG29 2.8 31.1 1.0
O C:HOH786 3.0 12.1 0.6
N C:GLY25 3.2 9.7 1.0
HB2 C:PRO24 3.2 9.9 1.0
O C:HOH572 3.3 35.1 1.0
O D:HOH672 3.3 24.6 0.4
O C:HOH686 3.3 36.3 1.0
N C:ASP26 3.5 12.4 1.0
HA2 C:GLY92 3.5 11.5 0.7
HB3 C:ASP26 3.6 20.5 1.0
HA2 C:GLY92 3.6 12.1 0.3
HA3 C:GLY25 3.7 12.0 1.0
HB2 C:ASP26 3.8 20.5 1.0
CD C:ARG29 3.8 25.9 1.0
CA C:GLY25 3.9 10.0 1.0
CB C:PRO24 4.0 8.3 1.0
HE C:ARG29 4.0 32.4 1.0
HA C:PRO24 4.0 9.3 1.0
CB C:ASP26 4.1 17.1 1.0
HB2 C:ARG29 4.1 25.6 1.0
HB3 C:PRO24 4.1 9.9 1.0
C C:PRO24 4.1 8.3 1.0
C C:GLY25 4.2 10.4 1.0
HA3 C:GLY92 4.2 12.1 0.3
CA C:PRO24 4.2 7.7 1.0
O C:VAL91 4.2 8.4 1.0
HD2 C:ARG29 4.3 31.1 1.0
HA3 C:GLY92 4.3 11.5 0.7
NE C:ARG29 4.3 27.0 1.0
CA C:GLY92 4.3 9.6 0.7
CA C:GLY92 4.4 10.1 0.3
CA C:ASP26 4.4 14.3 1.0
O C:HOH474 4.4 22.4 1.0
HH12 D:ARG47 4.5 18.0 0.6
HG3 C:ARG29 4.5 29.0 1.0
CG C:ARG29 4.6 24.2 1.0
H C:THR93 4.7 12.5 0.3
HG13 C:VAL91 4.7 11.1 1.0
CB C:ARG29 4.7 21.4 1.0
NH1 D:ARG47 4.8 15.0 0.6
HA2 C:GLY25 4.8 12.0 1.0
HH11 D:ARG47 4.9 18.0 0.6
HB3 C:ARG29 4.9 25.6 1.0
H C:THR93 4.9 11.1 0.7

Chlorine binding site 7 out of 12 in 4k6o

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Chlorine binding site 7 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:10.5
occ:0.96
H C:ASN221 2.4 7.8 1.0
HE2 C:LYS225 3.0 19.0 1.0
HA C:ILE220 3.0 8.3 1.0
O C:HOH594 3.0 26.3 0.8
HG13 C:ILE220 3.0 11.0 1.0
O C:HOH551 3.2 23.2 0.8
N C:ASN221 3.2 6.5 1.0
HB2 C:GLN224 3.3 10.7 1.0
HG21 C:VAL103 3.5 16.9 1.0
O C:HOH512 3.6 24.6 1.0
HG2 C:LYS225 3.6 12.5 1.0
HB3 C:ASN221 3.7 8.9 1.0
HG23 C:VAL103 3.8 16.9 1.0
HG3 C:GLN224 3.8 12.9 1.0
CA C:ILE220 3.8 7.0 1.0
CG1 C:ILE220 3.9 9.1 1.0
CE C:LYS225 3.9 15.8 1.0
O C:ASN221 4.0 6.4 1.0
HB3 C:GLN224 4.0 10.7 1.0
CG2 C:VAL103 4.0 14.1 1.0
C C:ILE220 4.0 6.9 1.0
CB C:GLN224 4.0 8.9 1.0
HG12 C:ILE220 4.0 11.0 1.0
H12 C:EOH310 4.0 20.0 1.0
CA C:ASN221 4.2 6.5 1.0
HG22 C:VAL103 4.2 16.9 1.0
CB C:ASN221 4.3 7.5 1.0
HE3 C:LYS225 4.3 19.0 1.0
HB2 C:ASN221 4.4 8.9 1.0
CG C:LYS225 4.4 10.4 1.0
CB C:ILE220 4.4 7.6 1.0
CG C:GLN224 4.4 10.8 1.0
C C:ASN221 4.5 5.9 1.0
CD C:LYS225 4.6 13.2 1.0
HD3 C:LYS225 4.7 15.8 1.0
HB C:ILE220 4.7 9.1 1.0
HG3 C:LYS225 4.7 12.5 1.0
HZ3 C:LYS225 4.7 22.8 1.0
HZ2 C:LYS225 4.7 22.8 1.0
NZ C:LYS225 4.7 19.0 1.0
HG2 C:GLN224 4.8 12.9 1.0
O C:HOH502 4.9 23.7 1.0
O C:ILE219 4.9 8.4 1.0
O C:HOH779 4.9 49.5 1.0
N C:ILE220 5.0 6.5 1.0

Chlorine binding site 8 out of 12 in 4k6o

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Chlorine binding site 8 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl303

b:23.4
occ:1.00
H C:PHE133 2.4 7.3 1.0
O C:HOH446 2.4 13.5 1.0
O C:HOH682 2.7 30.0 1.0
HG21 B:THR110 2.8 11.6 1.0
HB2 C:PHE133 3.0 8.9 1.0
HG1 B:THR110 3.0 9.7 1.0
O B:HOH493 3.1 10.8 0.5
HA C:ASP132 3.1 7.2 1.0
N C:PHE133 3.2 6.1 1.0
HA2 B:GLY153 3.2 8.1 1.0
HB2 B:MET152 3.7 9.9 1.0
CB C:PHE133 3.7 7.4 1.0
CG2 B:THR110 3.7 9.6 1.0
HB3 C:PHE133 3.7 8.9 1.0
OG1 B:THR110 3.7 8.1 1.0
HB3 B:MET152 3.8 9.9 1.0
O B:MET152 3.8 8.9 1.0
CA C:ASP132 3.9 6.0 1.0
HG23 B:THR110 4.0 11.6 1.0
CA C:PHE133 4.0 6.5 1.0
C C:ASP132 4.0 5.8 1.0
C B:MET152 4.0 7.3 1.0
CA B:GLY153 4.1 6.8 1.0
CB B:THR110 4.1 8.0 1.0
O B:HOH600 4.1 35.3 1.0
CB B:MET152 4.2 8.2 1.0
O C:HOH444 4.2 12.6 1.0
O C:PRO131 4.2 6.0 1.0
HB B:THR110 4.2 9.6 1.0
N B:GLY153 4.2 6.8 1.0
OD1 C:ASP132 4.2 9.8 1.0
HG22 B:THR110 4.3 11.6 1.0
HA C:PHE133 4.5 7.8 1.0
HA3 B:GLY153 4.5 8.1 1.0
O B:HOH460 4.6 14.4 1.0
CG C:ASP132 4.6 8.3 1.0
O C:HOH414 4.7 8.6 1.0
H B:GLY153 4.7 8.2 1.0
CA B:MET152 4.8 7.4 1.0
CB C:ASP132 4.8 7.0 1.0
H C:ASP134 4.8 9.2 1.0
MG C:MG307 4.8 12.7 0.6
O C:HOH533 4.9 12.9 0.6
N C:ASP132 4.9 5.3 1.0
CG C:PHE133 5.0 8.2 1.0
C C:PRO131 5.0 5.3 1.0

Chlorine binding site 9 out of 12 in 4k6o

Go back to Chlorine Binding Sites List in 4k6o
Chlorine binding site 9 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:13.6
occ:0.69
O D:HOH559 2.3 26.9 1.0
H D:GLY25 2.6 9.9 1.0
H D:ASP26 2.6 10.7 1.0
O C:HOH523 2.9 22.0 1.0
HG3 D:ARG29 3.1 19.9 1.0
O D:HOH564 3.1 19.3 0.9
O D:HOH670 3.1 53.3 1.0
HB2 D:PRO24 3.2 9.4 1.0
N D:GLY25 3.3 8.2 1.0
HA2 D:GLY92 3.4 16.2 0.5
HO1 C:GOL312 3.4 35.6 1.0
N D:ASP26 3.5 8.9 1.0
HA2 D:GLY92 3.5 11.9 0.5
HB3 D:ASP26 3.5 13.2 1.0
HH22 C:ARG47 3.5 18.6 0.7
HB2 D:ASP26 3.6 13.2 1.0
HA3 D:GLY25 3.8 10.4 1.0
CB D:PRO24 3.9 7.8 1.0
CB D:ASP26 3.9 11.0 1.0
CA D:GLY25 4.0 8.7 1.0
CG D:ARG29 4.0 16.6 1.0
HA D:PRO24 4.0 8.5 1.0
HB3 D:PRO24 4.1 9.4 1.0
HB2 D:ARG29 4.1 14.8 1.0
NH2 C:ARG47 4.1 15.5 0.7
O D:HOH780 4.1 23.7 0.6
HA3 D:GLY92 4.1 11.9 0.5
O D:VAL91 4.2 9.5 1.0
C D:PRO24 4.2 7.2 1.0
C D:GLY25 4.2 8.9 1.0
CA D:GLY92 4.2 13.5 0.5
HA3 D:GLY92 4.3 16.2 0.5
CA D:GLY92 4.3 9.9 0.5
CA D:PRO24 4.3 7.1 1.0
HE D:ARG29 4.3 23.4 1.0
O1 C:GOL312 4.3 29.6 1.0
H D:THR93 4.3 14.5 0.5
CA D:ASP26 4.4 9.6 1.0
HH21 C:ARG47 4.4 18.6 0.7
HG2 D:ARG29 4.4 19.9 1.0
HH12 C:ARG47 4.5 17.8 0.7
HG23 D:THR93 4.5 16.5 0.5
O D:HOH466 4.5 24.0 1.0
CB D:ARG29 4.5 12.4 1.0
HH12 C:ARG47 4.5 16.1 0.3
HB3 D:ARG29 4.6 14.8 1.0
HG13 D:VAL91 4.7 11.1 1.0
H D:THR93 4.7 9.4 0.5
HH22 C:ARG47 4.8 17.0 0.3
CZ C:ARG47 4.9 15.1 0.7
HA2 D:GLY25 4.9 10.4 1.0
O D:HOH584 4.9 30.0 1.0
NH1 C:ARG47 4.9 14.9 0.7
N D:THR93 4.9 12.1 0.5
NE D:ARG29 4.9 19.5 1.0
H12 C:GOL312 5.0 34.3 1.0
C D:VAL91 5.0 10.0 1.0
CD D:ARG29 5.0 18.8 1.0
O D:ASP26 5.0 8.9 1.0

Chlorine binding site 10 out of 12 in 4k6o

Go back to Chlorine Binding Sites List in 4k6o
Chlorine binding site 10 out of 12 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with 6-Methyluracil at 1.17 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl301

b:10.7
occ:0.74
H E:GLY25 2.5 8.2 1.0
HH11 E:ARG29 2.5 15.3 1.0
H E:ASP26 2.6 9.9 1.0
HD2 E:ARG29 3.0 15.1 1.0
O F:HOH601 3.1 31.1 1.0
HA2 E:GLY92 3.2 12.2 0.5
HD3 E:ARG29 3.2 15.1 1.0
O E:HOH814 3.2 28.7 0.5
N E:GLY25 3.2 6.8 1.0
HA2 E:GLY92 3.3 10.6 0.5
HB2 E:PRO24 3.3 7.4 1.0
NH1 E:ARG29 3.4 12.7 1.0
N E:ASP26 3.4 8.3 1.0
HH21 F:ARG47 3.4 18.3 0.4
HB3 E:ASP26 3.5 12.8 1.0
CD E:ARG29 3.5 12.6 1.0
HB2 E:ASP26 3.7 12.8 1.0
HA3 E:GLY25 3.7 8.9 1.0
HH12 E:ARG29 3.7 15.3 1.0
CA E:GLY25 3.8 7.4 1.0
CB E:ASP26 4.0 10.7 1.0
CB E:PRO24 4.0 6.1 1.0
CA E:GLY92 4.0 10.2 0.5
HA E:PRO24 4.0 7.3 1.0
O E:VAL91 4.1 7.7 1.0
NH2 F:ARG47 4.1 15.2 0.4
HA3 E:GLY92 4.1 12.2 0.5
HB2 E:ARG29 4.1 11.6 1.0
CA E:GLY92 4.1 8.8 0.5
O E:HOH814 4.2 24.8 0.5
C E:GLY25 4.2 7.5 1.0
HB3 E:PRO24 4.2 7.4 1.0
H E:THR93 4.2 9.9 0.5
C E:PRO24 4.2 6.2 1.0
HH22 F:ARG47 4.2 18.3 0.4
HA3 E:GLY92 4.2 10.6 0.5
CA E:PRO24 4.3 6.1 1.0
CZ E:ARG29 4.3 11.3 1.0
H E:THR93 4.3 9.9 0.5
NE E:ARG29 4.4 11.9 1.0
CA E:ASP26 4.4 9.2 1.0
HB3 E:ARG29 4.4 11.6 1.0
HH22 F:ARG47 4.5 15.2 0.6
O E:HOH741 4.6 31.6 0.7
CB E:ARG29 4.6 9.7 1.0
HG23 E:THR93 4.7 16.8 1.0
HG13 E:VAL91 4.7 10.2 1.0
CG E:ARG29 4.7 11.5 1.0
HA2 E:GLY25 4.8 8.9 1.0
NH2 F:ARG47 4.8 12.7 0.6
C E:VAL91 4.9 7.1 1.0
N E:THR93 4.9 8.2 1.0
N E:GLY92 4.9 9.4 0.5
C E:GLY92 4.9 9.8 0.5
N E:GLY92 4.9 8.6 0.5

Reference:

I.I.Prokofev, A.A.Lashkov, A.G.Gabdoulkhakov, M.V.Dontsova, T.A.Seregina, A.S.Mironov, C.Betzel, A.M.Mikhailov. Crystallization and Preliminary X-Ray Study of Vibrio Cholerae Uridine Phosphorylase in Complex with 6-Methyluracil Acta Crystallogr.,Sect.F V. 70 60 2014.
ISSN: ESSN 1744-3091
DOI: 10.1107/S2053230X13031877
Page generated: Sat Dec 12 10:49:57 2020

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