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Chlorine in PDB 4k7d: Crystal Structure of Parkin C-Terminal Ring Domains

Protein crystallography data

The structure of Crystal Structure of Parkin C-Terminal Ring Domains, PDB code: 4k7d was solved by V.Sauve, J.-F.Trempe, M.Menade, K.Gehring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.31 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.700, 106.625, 154.216, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 23.3

Other elements in 4k7d:

The structure of Crystal Structure of Parkin C-Terminal Ring Domains also contains other interesting chemical elements:

Zinc (Zn) 24 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Parkin C-Terminal Ring Domains (pdb code 4k7d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Parkin C-Terminal Ring Domains, PDB code: 4k7d:

Chlorine binding site 1 out of 1 in 4k7d

Go back to Chlorine Binding Sites List in 4k7d
Chlorine binding site 1 out of 1 in the Crystal Structure of Parkin C-Terminal Ring Domains


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Parkin C-Terminal Ring Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl510

b:54.7
occ:1.00
N C:GLY355 3.8 60.9 1.0
CA C:GLY355 3.8 63.7 1.0
N C:LEU342 3.9 55.0 1.0
CD2 C:LEU341 3.9 48.0 1.0
CA C:LEU341 4.2 46.2 1.0
CB C:GLU353 4.3 53.7 0.5
CB C:GLU353 4.3 53.7 0.5
CB C:LEU341 4.4 44.7 1.0
C C:LEU342 4.4 54.1 1.0
O C:LEU342 4.4 57.1 1.0
C C:LEU341 4.5 48.4 1.0
OE1 C:GLU353 4.6 58.0 0.5
CA C:LEU342 4.7 49.4 1.0
N C:PRO343 4.7 57.7 1.0
C C:GLU353 4.7 58.1 1.0
N C:GLU353 4.8 50.4 1.0
CG C:LEU341 4.8 40.1 1.0
CA C:GLU353 4.8 52.8 0.5
C C:GLY355 4.8 63.1 1.0
CA C:GLU353 4.9 52.8 0.5
N C:GLY354 4.9 53.8 1.0
O C:GLY355 4.9 61.7 1.0

Reference:

J.F.Trempe, V.Sauve, K.Grenier, M.Seirafi, M.Y.Tang, M.Menade, S.Al-Abdul-Wahid, J.Krett, K.Wong, G.Kozlov, B.Nagar, E.A.Fon, K.Gehring. Structure of Parkin Reveals Mechanisms For Ubiquitin Ligase Activation. Science V. 340 1451 2013.
ISSN: ISSN 0036-8075
PubMed: 23661642
DOI: 10.1126/SCIENCE.1237908
Page generated: Sat Dec 12 10:49:59 2020

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