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Chlorine in PDB 4k8x: Binary Complex of 9N Dna Polymerase in the Replicative State

Enzymatic activity of Binary Complex of 9N Dna Polymerase in the Replicative State

All present enzymatic activity of Binary Complex of 9N Dna Polymerase in the Replicative State:
2.7.7.7;

Protein crystallography data

The structure of Binary Complex of 9N Dna Polymerase in the Replicative State, PDB code: 4k8x was solved by K.Betz, K.Diederichs, A.Marx, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.71 / 2.28
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 112.215, 142.616, 66.702, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Binary Complex of 9N Dna Polymerase in the Replicative State (pdb code 4k8x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Binary Complex of 9N Dna Polymerase in the Replicative State, PDB code: 4k8x:

Chlorine binding site 1 out of 1 in 4k8x

Go back to Chlorine Binding Sites List in 4k8x
Chlorine binding site 1 out of 1 in the Binary Complex of 9N Dna Polymerase in the Replicative State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Binary Complex of 9N Dna Polymerase in the Replicative State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl810

b:79.3
occ:1.00
N A:ASN370 3.0 38.8 1.0
CA A:PRO369 3.6 39.7 1.0
CE2 A:TYR110 3.7 49.5 1.0
C A:PRO369 3.7 37.1 1.0
ND2 A:ASN370 3.8 37.3 1.0
CB A:PRO369 3.9 34.4 1.0
CB A:ASN370 3.9 38.2 1.0
CA A:ASN370 4.0 42.6 1.0
CG A:ASN370 4.0 40.1 1.0
CZ A:PHE75 4.1 50.0 1.0
CD2 A:TYR110 4.3 40.7 1.0
O A:ASN370 4.4 43.8 1.0
C A:ASN370 4.7 45.1 1.0
CE1 A:PHE75 4.7 48.5 1.0
CZ A:TYR110 4.7 53.0 1.0
O A:HOH1009 4.7 45.5 1.0
OH A:TYR110 4.8 58.5 1.0
OD1 A:ASN370 4.8 35.4 1.0
O A:PRO369 4.9 35.3 1.0
N A:PRO369 4.9 38.9 1.0

Reference:

K.Bergen, K.Betz, W.Welte, K.Diederichs, A.Marx. Structures of Kod and 9N Dna Polymerases Complexed with Primer Template Duplex Chembiochem V. 14 1058 2013.
ISSN: ISSN 1439-4227
PubMed: 23733496
DOI: 10.1002/CBIC.201300175
Page generated: Sun Jul 21 18:04:39 2024

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