Atomistry » Chlorine » PDB 4kbb-4kmx » 4kgn
Atomistry »
  Chlorine »
    PDB 4kbb-4kmx »
      4kgn »

Chlorine in PDB 4kgn: Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine

Enzymatic activity of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine

All present enzymatic activity of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine:
2.1.1.207;

Protein crystallography data

The structure of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine, PDB code: 4kgn was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.17 / 2.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.600, 149.710, 80.300, 90.00, 90.49, 90.00
R / Rfree (%) 16.9 / 19.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine (pdb code 4kgn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine, PDB code: 4kgn:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4kgn

Go back to Chlorine Binding Sites List in 4kgn
Chlorine binding site 1 out of 6 in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:21.4
occ:1.00
 O B:HOH315 2.8 29.4 1.0
N A:ASN134 3.3 17.8 1.0
ND2 A:ASN137 3.3 16.7 1.0
ND2 B:ASN24 3.4 18.2 1.0
CA A:LEU133 3.6 18.0 1.0
CA B:LEU21 3.6 21.4 1.0
CD1 B:LEU21 3.7 22.4 1.0
CB B:LEU21 3.8 21.9 1.0
CD2 A:LEU133 3.9 17.2 1.0
CB A:LEU133 3.9 17.6 1.0
N B:LEU21 3.9 21.4 1.0
C A:LEU133 3.9 18.3 1.0
CB A:ASN134 4.1 17.9 1.0
CA A:ASN134 4.3 17.8 1.0
CG A:ASN137 4.3 16.9 1.0
CB A:ASN137 4.3 16.5 1.0
CG B:LEU21 4.4 23.4 1.0
C B:ARG20 4.5 20.9 1.0
CG B:ARG20 4.5 31.4 1.0
CG B:ASN24 4.5 18.4 1.0
CG A:LEU133 4.6 16.9 1.0
O B:ARG20 4.6 19.7 1.0
O B:ASN17 4.8 19.6 1.0
O A:SER132 4.8 18.0 1.0
CB B:ASN24 4.8 18.8 1.0
N A:LEU133 4.9 18.3 1.0
C B:LEU21 5.0 19.7 1.0

Chlorine binding site 2 out of 6 in 4kgn

Go back to Chlorine Binding Sites List in 4kgn
Chlorine binding site 2 out of 6 in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:35.7
occ:1.00
 N B:GLU10 3.2 35.5 1.0
N B:GLU104 3.4 41.2 1.0
N B:ILE11 3.4 34.0 1.0
O B:HOH321 3.5 32.1 1.0
ND2 B:ASN14 3.8 32.1 1.0
CB B:GLU104 3.8 44.6 1.0
CD2 B:LEU135 3.9 30.3 1.0
CA B:GLU10 4.0 37.7 1.0
CB B:GLU10 4.0 38.3 1.0
C B:PRO9 4.1 34.0 1.0
CA B:PRO9 4.1 32.6 1.0
CA B:ALA103 4.1 38.5 1.0
CB B:ILE11 4.1 34.2 1.0
C B:GLU10 4.2 37.2 1.0
CA B:GLU104 4.2 44.8 1.0
C B:ALA103 4.2 39.8 1.0
CA B:ILE11 4.3 33.0 1.0
CD1 B:ILE11 4.3 35.9 1.0
CG1 B:ILE11 4.3 36.0 1.0
CB B:ALA103 4.5 39.5 1.0
CB B:PRO9 4.5 30.9 1.0
O B:ILE11 4.6 27.4 1.0
CB B:ASN14 4.6 29.3 1.0
CG B:ASN14 4.7 32.0 1.0
C B:ILE11 4.9 30.6 1.0
O B:HOH322 5.0 40.7 1.0

Chlorine binding site 3 out of 6 in 4kgn

Go back to Chlorine Binding Sites List in 4kgn
Chlorine binding site 3 out of 6 in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:19.3
occ:1.00
 O D:HOH205 2.9 28.6 1.0
ND2 C:ASN137 3.1 17.6 1.0
N C:ASN134 3.2 18.7 1.0
ND2 D:ASN24 3.4 21.6 1.0
CA C:LEU133 3.6 18.6 1.0
CD1 D:LEU21 3.6 25.8 1.0
CA D:LEU21 3.7 23.4 1.0
CB D:LEU21 3.8 23.7 1.0
CD2 C:LEU133 3.9 18.2 1.0
CB C:LEU133 3.9 17.7 1.0
CB C:ASN134 3.9 18.7 1.0
C C:LEU133 3.9 18.9 1.0
N D:LEU21 4.0 23.5 1.0
CG C:ASN137 4.1 17.8 1.0
CB C:ASN137 4.1 17.6 1.0
CA C:ASN134 4.2 18.4 1.0
CG D:ARG20 4.3 35.6 1.0
CG D:LEU21 4.3 25.3 1.0
C D:ARG20 4.4 25.2 1.0
CG C:LEU133 4.5 17.9 1.0
CG D:ASN24 4.6 21.7 1.0
O D:ARG20 4.6 24.0 1.0
CD D:ARG20 4.6 41.8 1.0
O D:ASN17 4.8 26.7 1.0
O C:SER132 4.8 21.9 1.0
CB D:ARG20 4.8 30.4 1.0
N C:LEU133 4.9 19.9 1.0
CB D:ASN24 4.9 21.4 1.0
O C:ASN134 5.0 17.5 1.0
NE D:ARG20 5.0 48.9 1.0

Chlorine binding site 4 out of 6 in 4kgn

Go back to Chlorine Binding Sites List in 4kgn
Chlorine binding site 4 out of 6 in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl202

b:23.0
occ:1.00
 O F:HOH309 3.1 25.0 1.0
N E:ASN134 3.2 17.6 1.0
ND2 F:ASN24 3.3 22.5 1.0
ND2 E:ASN137 3.4 18.5 1.0
CA E:LEU133 3.6 18.2 1.0
CA F:LEU21 3.6 22.4 1.0
CD2 E:LEU133 3.8 18.7 1.0
CB F:LEU21 3.8 23.4 1.0
CD1 F:LEU21 3.9 24.3 1.0
C E:LEU133 3.9 18.0 1.0
CB E:LEU133 3.9 17.9 1.0
N F:LEU21 4.0 21.8 1.0
CB E:ASN134 4.1 18.6 1.0
CA E:ASN134 4.2 17.9 1.0
CB E:ASN137 4.3 17.9 1.0
CG E:ASN137 4.4 18.4 1.0
C F:ARG20 4.4 21.6 1.0
CG E:LEU133 4.4 18.8 1.0
CG F:ASN24 4.5 22.6 1.0
CG F:LEU21 4.5 24.4 1.0
O F:ARG20 4.6 20.9 1.0
CB F:ASN24 4.7 22.1 1.0
CB F:ARG20 4.8 23.2 1.0
O E:SER132 4.8 21.3 1.0
N E:LEU133 4.8 19.3 1.0
O F:ASN17 4.9 22.3 1.0
C F:LEU21 4.9 22.1 1.0

Chlorine binding site 5 out of 6 in 4kgn

Go back to Chlorine Binding Sites List in 4kgn
Chlorine binding site 5 out of 6 in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl201

b:40.1
occ:1.00
 O F:HOH303 3.0 36.9 1.0
N F:GLU10 3.3 35.5 1.0
N F:ILE11 3.3 40.8 1.0
N F:GLU104 3.7 40.2 1.0
ND2 F:ASN14 3.7 40.3 1.0
CB F:ILE11 3.9 44.3 1.0
CD2 F:LEU135 4.0 32.5 1.0
CG1 F:ILE11 4.0 46.6 1.0
CA F:GLU10 4.0 38.3 1.0
CB F:GLU104 4.1 44.7 1.0
CD1 F:ILE11 4.1 46.0 1.0
CB F:GLU10 4.1 38.9 1.0
CA F:ILE11 4.2 42.0 1.0
C F:GLU10 4.2 40.7 1.0
C F:PRO9 4.2 33.5 1.0
CA F:PRO9 4.3 31.2 1.0
CA F:ALA103 4.3 35.3 1.0
O F:ILE11 4.3 41.0 1.0
CB F:ASN14 4.4 36.5 1.0
C F:ALA103 4.5 36.8 1.0
CA F:GLU104 4.5 43.6 1.0
CB F:PRO9 4.5 30.6 1.0
CB F:ALA103 4.6 36.9 1.0
CG F:ASN14 4.6 39.4 1.0
C F:ILE11 4.8 40.3 1.0

Chlorine binding site 6 out of 6 in 4kgn

Go back to Chlorine Binding Sites List in 4kgn
Chlorine binding site 6 out of 6 in the Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Trna (Cytidine(34)-2'-O)-Methyltransferase Bound to S-Adenosyl Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl202

b:21.4
occ:1.00
 ND2 G:ASN137 3.1 18.0 1.0
O H:HOH214 3.1 26.5 1.0
N G:ASN134 3.3 18.6 1.0
ND2 H:ASN24 3.5 22.8 1.0
CA G:LEU133 3.6 17.6 1.0
CA H:LEU21 3.6 20.4 1.0
CB H:LEU21 3.8 21.3 1.0
CD2 G:LEU133 3.8 17.7 1.0
CD1 H:LEU21 3.9 21.7 1.0
CB G:LEU133 3.9 17.1 1.0
C G:LEU133 3.9 17.8 1.0
N H:LEU21 4.0 21.2 1.0
CB G:ASN134 4.1 18.1 1.0
CG G:ASN137 4.1 17.6 1.0
CB G:ASN137 4.2 17.7 1.0
CA G:ASN134 4.3 18.8 1.0
CG H:ARG20 4.3 28.8 1.0
CG H:LEU21 4.4 22.4 1.0
C H:ARG20 4.5 22.2 1.0
CG G:LEU133 4.5 17.0 1.0
CG H:ASN24 4.6 21.2 1.0
O H:ARG20 4.6 21.6 1.0
O H:ASN17 4.7 23.9 1.0
O G:SER132 4.8 19.3 1.0
CB H:ASN24 4.8 20.6 1.0
N G:LEU133 4.8 18.6 1.0
C H:LEU21 4.9 19.9 1.0
CB H:ARG20 5.0 26.0 1.0

Reference:

T.E.Edwards, J.W.Fairman, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Trmh Family Trna Methyltransferase Bound to S-Adenosyl Homocysteine To Be Published.
Page generated: Sun Jul 21 18:09:20 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy