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Chlorine in PDB 4khs: Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position

Enzymatic activity of Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position

All present enzymatic activity of Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position:
2.7.7.7;

Protein crystallography data

The structure of Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position, PDB code: 4khs was solved by A.R.Clausen, L.C.Pedersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.08 / 2.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.699, 119.572, 127.800, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.6

Other elements in 4khs:

The structure of Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position (pdb code 4khs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position, PDB code: 4khs:

Chlorine binding site 1 out of 1 in 4khs

Go back to Chlorine Binding Sites List in 4khs
Chlorine binding site 1 out of 1 in the Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at 0 Position within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1008

b:53.3
occ:1.00
 O A:HOH1473 3.5 48.5 1.0
NH1 A:ARG482 3.6 35.0 1.0
CA A:LYS483 3.9 42.5 1.0
CG2 A:THR413 4.0 39.4 1.0
CD A:LYS486 4.0 43.9 1.0
CB A:LYS483 4.0 46.9 1.0
CG A:LYS483 4.0 53.1 1.0
CD A:ARG482 4.1 35.3 1.0
CZ A:ARG482 4.2 34.4 1.0
CE1 A:PHE479 4.3 35.2 1.0
NE A:ARG482 4.4 36.5 1.0
CZ A:PHE479 4.6 33.3 1.0
N A:LYS483 4.6 38.9 1.0
CB A:LYS486 4.6 36.2 1.0
CD A:LYS483 4.6 59.7 1.0
O A:HOH1662 4.7 66.3 1.0
CG A:LYS486 4.8 39.4 1.0
NZ A:LYS486 4.9 49.5 1.0
CE A:LYS486 5.0 47.7 1.0
OG A:SER414 5.0 36.0 0.5
O2G A:TTP1002 5.0 32.0 1.0
O A:LYS483 5.0 42.4 1.0
C A:LYS483 5.0 42.8 1.0

Reference:

A.R.Clausen, M.S.Murray, A.R.Passer, L.C.Pedersen, T.A.Kunkel. Structure-Function Analysis of Ribonucleotide Bypass By B Family Dna Replicases. Proc.Natl.Acad.Sci.Usa V. 110 16802 2013.
ISSN: ISSN 0027-8424
PubMed: 24082122
DOI: 10.1073/PNAS.1309119110
Page generated: Sun Jul 21 18:10:04 2024

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