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Chlorine in PDB 4knm: Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide

Enzymatic activity of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide

All present enzymatic activity of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide, PDB code: 4knm was solved by A.Smirnov, E.Manakova, S.Grazulis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.46 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.591, 58.165, 71.075, 90.00, 92.16, 90.00
R / Rfree (%) 17.8 / 23.5

Other elements in 4knm:

The structure of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide (pdb code 4knm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide, PDB code: 4knm:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4knm

Go back to Chlorine Binding Sites List in 4knm
Chlorine binding site 1 out of 2 in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:18.4
occ:1.00
CL1 A:E1E302 0.0 18.4 1.0
C3 A:E1E302 1.7 16.7 1.0
C2 A:E1E302 2.7 20.9 1.0
C4 A:E1E302 2.7 16.8 1.0
S6 A:E1E302 3.2 14.5 1.0
O8 A:E1E302 3.2 14.4 1.0
O7 A:E1E302 3.3 15.6 1.0
CD2 A:LEU200 3.4 18.6 1.0
CG2 A:VAL145 3.5 13.7 1.0
CG1 A:VAL123 3.7 15.1 1.0
CG2 A:VAL123 3.9 11.4 1.0
C22 A:E1E302 4.0 22.1 1.0
C5 A:E1E302 4.1 17.0 1.0
CD1 A:LEU143 4.2 13.8 1.0
CG2 A:VAL209 4.2 17.1 1.0
CG A:LEU200 4.4 20.4 1.0
CB A:VAL123 4.4 13.6 1.0
C1 A:E1E302 4.5 22.0 1.0
CD1 A:LEU200 4.7 24.1 1.0
CA A:LEU200 4.7 16.0 1.0
CB A:VAL145 4.8 12.4 1.0
CB A:LEU200 4.8 15.9 1.0
N11 A:E1E302 5.0 14.7 1.0

Chlorine binding site 2 out of 2 in 4knm

Go back to Chlorine Binding Sites List in 4knm
Chlorine binding site 2 out of 2 in the Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Carbonic Anhydrase Isozyme XIII with 2- Chloro-4-{[(4,6-Dimethylpyrimidin-2-Yl) Sulfanyl]Acetyl}Benzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:19.0
occ:1.00
CL1 B:E1E302 0.0 19.0 1.0
C3 B:E1E302 1.7 18.6 1.0
C2 B:E1E302 2.7 20.4 1.0
C4 B:E1E302 2.8 18.4 1.0
S6 B:E1E302 3.3 13.8 1.0
O8 B:E1E302 3.3 9.5 1.0
O7 B:E1E302 3.3 14.0 1.0
CD2 B:LEU200 3.4 19.2 1.0
CG2 B:VAL145 3.4 12.8 1.0
CG1 B:VAL123 3.8 14.1 1.0
CG2 B:VAL123 3.8 13.4 1.0
C22 B:E1E302 4.0 22.9 1.0
C5 B:E1E302 4.1 17.5 1.0
CG2 B:VAL209 4.1 16.8 1.0
CD1 B:LEU143 4.2 11.2 1.0
CG B:LEU200 4.3 17.4 1.0
CB B:VAL123 4.4 13.3 1.0
CA B:LEU200 4.5 14.8 1.0
C1 B:E1E302 4.5 20.0 1.0
CB B:LEU200 4.6 15.6 1.0
CB B:VAL145 4.8 13.0 1.0
CD1 B:LEU200 4.9 16.9 1.0
N11 B:E1E302 5.0 14.8 1.0

Reference:

E.Capkauskaite, A.Zubriene, A.Smirnov, J.Torresan, M.Kisonaite, J.Kazokaite, J.Gylyte, V.Michailoviene, V.Jogaite, E.Manakova, S.Grazulis, S.Tumkevicius, D.Matulis. Benzenesulfonamides with Pyrimidine Moiety As Inhibitors of Human Carbonic Anhydrases I, II, VI, VII, XII, and XIII Bioorg.Med.Chem. V. 21 6937 2013.
ISSN: ISSN 0968-0896
PubMed: 24103428
DOI: 10.1016/J.BMC.2013.09.029
Page generated: Fri Jul 11 17:51:30 2025

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