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Chlorine in PDB 4kxi: Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme

Enzymatic activity of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme

All present enzymatic activity of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme, PDB code: 4kxi was solved by B.Koley Seth, A.Ray, S.Basu, S.Biswas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.11 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.589, 77.589, 36.390, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 25.6

Other elements in 4kxi:

The structure of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme also contains other interesting chemical elements:

Nickel (Ni) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme (pdb code 4kxi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme, PDB code: 4kxi:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4kxi

Go back to Chlorine Binding Sites List in 4kxi
Chlorine binding site 1 out of 6 in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:47.3
occ:1.00
 CL A:LCP203 0.0 47.3 1.0
O1 A:LCP203 1.7 60.6 1.0
O4 A:LCP203 1.8 66.9 1.0
O2 A:LCP203 1.8 58.7 1.0
O3 A:LCP203 1.8 60.7 1.0
OG A:SER24 2.8 26.8 1.0
N A:GLY26 3.3 27.3 1.0
CB A:SER24 3.4 27.8 1.0
CA A:GLY26 3.7 27.4 1.0
CA A:GLN121 3.7 35.4 1.0
CD1 A:ILE124 4.0 39.1 1.0
CB A:GLN121 4.0 38.5 1.0
N A:GLN121 4.0 30.7 1.0
N A:LEU25 4.1 27.1 1.0
CG2 A:VAL120 4.2 27.7 1.0
C A:SER24 4.2 27.7 1.0
CG A:GLN121 4.4 45.3 1.0
C A:VAL120 4.4 31.1 1.0
O A:VAL120 4.4 28.9 1.0
C A:LEU25 4.4 27.8 1.0
CA A:SER24 4.5 27.3 1.0
CG1 A:ILE124 4.6 36.6 1.0
C A:GLY26 4.6 25.2 1.0
O A:SER24 4.7 24.2 1.0
N A:ASN27 4.7 26.8 1.0
CA A:LEU25 4.7 27.3 1.0
C A:GLN121 5.0 35.4 1.0

Chlorine binding site 2 out of 6 in 4kxi

Go back to Chlorine Binding Sites List in 4kxi
Chlorine binding site 2 out of 6 in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:0.8
occ:1.00
 CL A:LCP204 0.0 0.8 1.0
O1 A:LCP204 1.7 0.1 1.0
O3 A:LCP204 1.8 87.6 1.0
O2 A:LCP204 1.8 0.4 1.0
O4 A:LCP204 1.8 0.7 1.0
NI A:NI201 3.0 90.5 1.0

Chlorine binding site 3 out of 6 in 4kxi

Go back to Chlorine Binding Sites List in 4kxi
Chlorine binding site 3 out of 6 in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:89.7
occ:1.00
 CL A:LCP205 0.0 89.7 1.0
O1 A:LCP205 1.7 76.8 1.0
O3 A:LCP205 1.8 79.3 1.0
O4 A:LCP205 1.8 82.5 1.0
O2 A:LCP205 1.8 84.3 1.0
OD2 A:ASP101 3.4 47.5 1.0
OD1 A:ASP101 3.6 44.5 1.0
CG A:ASP101 3.9 43.2 1.0
CE3 A:TRP62 4.7 41.6 1.0
CZ3 A:TRP62 4.7 44.4 1.0
CD2 A:TRP62 4.9 39.2 1.0

Chlorine binding site 4 out of 6 in 4kxi

Go back to Chlorine Binding Sites List in 4kxi
Chlorine binding site 4 out of 6 in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:57.7
occ:1.00
 CL A:LCP206 0.0 57.7 1.0
O1 A:LCP206 1.7 64.0 1.0
O3 A:LCP206 1.8 76.8 1.0
O4 A:LCP206 1.8 64.0 1.0
O2 A:LCP206 1.8 70.2 1.0
NZ A:LYS33 3.9 30.9 1.0
CZ3 A:TRP123 4.0 33.9 1.0
CE2 A:PHE38 4.0 27.9 1.0
CD A:ARG5 4.2 32.6 1.0
CD A:LYS33 4.3 31.9 1.0
CE A:LYS33 4.3 31.0 1.0
CB A:ARG5 4.5 33.3 1.0
CZ A:PHE38 4.7 27.0 1.0
CH2 A:TRP123 4.7 34.7 1.0
CE3 A:TRP123 4.9 33.4 1.0
CG A:ARG5 4.9 35.0 1.0
CD2 A:PHE38 4.9 26.6 1.0
NE A:ARG5 5.0 35.2 1.0

Chlorine binding site 5 out of 6 in 4kxi

Go back to Chlorine Binding Sites List in 4kxi
Chlorine binding site 5 out of 6 in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:61.3
occ:1.00
 CL A:LCP207 0.0 61.3 1.0
O1 A:LCP207 1.7 71.5 1.0
O3 A:LCP207 1.8 74.0 1.0
O2 A:LCP207 1.8 64.1 1.0
O4 A:LCP207 1.8 71.9 1.0
O A:ARG114 2.6 24.6 1.0
O A:HOH311 3.1 31.9 1.0
C A:ARG114 3.7 26.7 1.0
CE2 A:PHE34 4.0 30.2 1.0
CA A:ARG114 4.1 26.7 1.0
CZ A:PHE34 4.2 28.9 1.0
O A:HOH336 4.2 36.6 1.0
CB A:ARG114 4.3 27.1 1.0
CG2 A:THR118 4.4 29.0 1.0
N A:CYS115 4.8 24.3 1.0
OG1 A:THR118 4.9 26.0 1.0
CB A:THR118 4.9 28.6 1.0
CD2 A:PHE34 5.0 29.0 1.0

Chlorine binding site 6 out of 6 in 4kxi

Go back to Chlorine Binding Sites List in 4kxi
Chlorine binding site 6 out of 6 in the Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:58.1
occ:0.50
 N A:GLY71 3.0 41.7 1.0
O A:HOH338 3.6 49.2 1.0
C A:PRO70 3.8 35.4 1.0
CA A:PRO70 3.8 33.8 1.0
CA A:GLY71 3.8 41.7 1.0
N A:SER72 4.1 43.7 1.0
C A:GLY71 4.3 44.5 1.0
O A:THR69 4.4 24.9 1.0
N A:PRO70 4.8 33.4 1.0
O A:SER72 4.8 48.5 1.0
CB A:PRO70 4.8 33.8 1.0
OG A:SER72 4.9 44.6 1.0
O A:PRO70 4.9 41.2 1.0
C A:THR69 4.9 28.1 1.0

Reference:

B.Koley Seth, A.Ray, S.Biswas, S.Basu. Crystallographic Study of the Complex of Ni(II) Schiff Base Complex and Hew Lysozyme To Be Published.
Page generated: Sun Jul 21 18:37:04 2024

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