Chlorine in PDB 4l82: Structure of A Putative Oxidoreductase From Rickettsia Felis
Protein crystallography data
The structure of Structure of A Putative Oxidoreductase From Rickettsia Felis, PDB code: 4l82
was solved by
Seattle Structural Genomics Center For Infectious Disease (Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.79 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.580,
79.730,
155.140,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
22.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of A Putative Oxidoreductase From Rickettsia Felis
(pdb code 4l82). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of A Putative Oxidoreductase From Rickettsia Felis, PDB code: 4l82:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 4l82
Go back to
Chlorine Binding Sites List in 4l82
Chlorine binding site 1 out
of 4 in the Structure of A Putative Oxidoreductase From Rickettsia Felis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of A Putative Oxidoreductase From Rickettsia Felis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:45.3
occ:1.00
|
C
|
A:SER44
|
3.7
|
19.5
|
1.0
|
O
|
A:HOH349
|
3.8
|
26.2
|
1.0
|
N
|
A:SER44
|
3.8
|
18.4
|
1.0
|
N
|
A:LEU45
|
3.9
|
21.1
|
1.0
|
CE1
|
B:HIS130
|
3.9
|
20.0
|
1.0
|
CA
|
A:SER44
|
4.0
|
19.4
|
1.0
|
O
|
A:SER44
|
4.0
|
18.4
|
1.0
|
C
|
A:VAL43
|
4.1
|
19.1
|
1.0
|
CB
|
A:SER42
|
4.1
|
21.2
|
1.0
|
NE2
|
B:HIS130
|
4.2
|
19.8
|
1.0
|
O
|
A:VAL43
|
4.3
|
20.4
|
1.0
|
CA
|
A:LEU45
|
4.5
|
21.8
|
1.0
|
CB
|
A:LEU45
|
4.5
|
23.2
|
1.0
|
N
|
A:VAL43
|
4.5
|
17.9
|
1.0
|
C
|
A:SER42
|
4.7
|
19.1
|
1.0
|
CE2
|
B:PHE10
|
4.7
|
22.8
|
1.0
|
ND1
|
B:HIS130
|
4.7
|
20.2
|
1.0
|
CA
|
A:VAL43
|
4.8
|
18.4
|
1.0
|
O
|
A:SER42
|
5.0
|
20.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 4l82
Go back to
Chlorine Binding Sites List in 4l82
Chlorine binding site 2 out
of 4 in the Structure of A Putative Oxidoreductase From Rickettsia Felis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of A Putative Oxidoreductase From Rickettsia Felis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:43.8
occ:1.00
|
CB
|
A:HIS85
|
3.7
|
19.9
|
1.0
|
CD1
|
A:ILE97
|
3.8
|
20.1
|
1.0
|
O
|
A:ASP81
|
3.9
|
21.1
|
1.0
|
CG
|
A:HIS85
|
3.9
|
19.9
|
1.0
|
CA
|
A:ILE82
|
4.1
|
20.5
|
1.0
|
C
|
A:ASP81
|
4.2
|
21.4
|
1.0
|
N
|
A:ILE82
|
4.2
|
20.9
|
1.0
|
OD2
|
A:ASP81
|
4.3
|
23.7
|
0.5
|
CG1
|
A:ILE82
|
4.3
|
22.8
|
1.0
|
ND1
|
A:HIS85
|
4.3
|
21.4
|
1.0
|
O
|
A:HOH304
|
4.3
|
20.4
|
1.0
|
CD1
|
A:ILE82
|
4.4
|
23.4
|
1.0
|
CG
|
A:ASP81
|
4.5
|
22.8
|
0.5
|
CD2
|
A:HIS85
|
4.5
|
19.0
|
1.0
|
O
|
A:HOH380
|
4.6
|
36.6
|
1.0
|
CB
|
A:ASP81
|
4.7
|
23.6
|
0.5
|
CB
|
A:ASP81
|
4.8
|
23.9
|
0.5
|
CB
|
A:ILE82
|
4.9
|
21.3
|
1.0
|
O
|
A:HOH348
|
5.0
|
28.1
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 4l82
Go back to
Chlorine Binding Sites List in 4l82
Chlorine binding site 3 out
of 4 in the Structure of A Putative Oxidoreductase From Rickettsia Felis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of A Putative Oxidoreductase From Rickettsia Felis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:41.1
occ:1.00
|
O
|
B:HOH343
|
3.6
|
36.2
|
1.0
|
C
|
B:SER44
|
3.6
|
18.7
|
1.0
|
N
|
B:SER44
|
3.6
|
17.4
|
1.0
|
CA
|
B:SER44
|
3.8
|
18.5
|
1.0
|
C
|
B:VAL43
|
3.8
|
17.8
|
1.0
|
O
|
B:SER44
|
3.8
|
18.3
|
1.0
|
N
|
B:LEU45
|
3.9
|
20.1
|
1.0
|
CE1
|
A:HIS130
|
3.9
|
18.3
|
1.0
|
NE2
|
A:HIS130
|
4.0
|
17.1
|
1.0
|
O
|
B:VAL43
|
4.1
|
19.0
|
1.0
|
CB
|
B:SER42
|
4.1
|
18.2
|
1.0
|
N
|
B:VAL43
|
4.3
|
16.3
|
1.0
|
O
|
A:HOH379
|
4.4
|
27.5
|
1.0
|
CE2
|
A:PHE10
|
4.4
|
20.0
|
1.0
|
C
|
B:SER42
|
4.5
|
16.8
|
1.0
|
CA
|
B:LEU45
|
4.5
|
21.2
|
1.0
|
CA
|
B:VAL43
|
4.6
|
16.7
|
1.0
|
CB
|
B:LEU45
|
4.6
|
22.3
|
1.0
|
ND1
|
A:HIS130
|
4.6
|
18.1
|
1.0
|
CD2
|
A:HIS130
|
4.8
|
16.6
|
1.0
|
O
|
B:SER42
|
4.8
|
16.9
|
1.0
|
CZ
|
A:PHE10
|
4.9
|
19.5
|
1.0
|
CA
|
B:SER42
|
4.9
|
17.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 4l82
Go back to
Chlorine Binding Sites List in 4l82
Chlorine binding site 4 out
of 4 in the Structure of A Putative Oxidoreductase From Rickettsia Felis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of A Putative Oxidoreductase From Rickettsia Felis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl201
b:44.2
occ:1.00
|
O
|
D:HOH320
|
3.6
|
28.3
|
1.0
|
N
|
D:SER44
|
3.7
|
20.0
|
1.0
|
C
|
D:SER44
|
3.7
|
20.8
|
1.0
|
C
|
D:VAL43
|
3.8
|
20.4
|
1.0
|
CE1
|
C:HIS130
|
3.8
|
20.2
|
1.0
|
O
|
D:VAL43
|
3.9
|
20.4
|
1.0
|
CA
|
D:SER44
|
3.9
|
20.4
|
1.0
|
O
|
D:HOH356
|
3.9
|
38.0
|
1.0
|
O
|
D:SER44
|
3.9
|
20.9
|
1.0
|
N
|
D:LEU45
|
4.0
|
22.2
|
1.0
|
CB
|
D:SER42
|
4.0
|
21.9
|
1.0
|
NE2
|
C:HIS130
|
4.0
|
19.3
|
1.0
|
N
|
D:VAL43
|
4.2
|
20.7
|
1.0
|
C
|
D:SER42
|
4.4
|
20.4
|
1.0
|
O
|
C:HOH386
|
4.5
|
35.0
|
1.0
|
CA
|
D:VAL43
|
4.5
|
20.4
|
1.0
|
ND1
|
C:HIS130
|
4.6
|
20.1
|
1.0
|
CE2
|
C:PHE10
|
4.6
|
25.4
|
1.0
|
CA
|
D:LEU45
|
4.6
|
23.3
|
1.0
|
CB
|
D:LEU45
|
4.7
|
25.1
|
1.0
|
O
|
D:SER42
|
4.7
|
21.6
|
1.0
|
CA
|
D:SER42
|
4.8
|
20.8
|
1.0
|
CD2
|
C:HIS130
|
4.9
|
18.8
|
1.0
|
OG
|
D:SER42
|
5.0
|
22.9
|
1.0
|
CZ
|
C:PHE10
|
5.0
|
25.4
|
1.0
|
|
Reference:
M.C.Clifton,
J.A.Abendroth.
Structure of A Putative Oxidoreductase From Rickettsia Felis To Be Published.
Page generated: Sun Jul 21 18:43:38 2024
|