Chlorine in PDB 4lb8: Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
Protein crystallography data
The structure of Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution, PDB code: 4lb8
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.36 /
2.49
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.595,
140.829,
89.289,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18 /
22.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
(pdb code 4lb8). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution, PDB code: 4lb8:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4lb8
Go back to
Chlorine Binding Sites List in 4lb8
Chlorine binding site 1 out
of 5 in the Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl400
b:71.1
occ:1.00
|
OH
|
A:TYR229
|
3.2
|
78.0
|
1.0
|
NE
|
A:ARG296
|
3.3
|
87.6
|
1.0
|
CE2
|
A:TYR229
|
3.4
|
65.3
|
1.0
|
N
|
A:GLY297
|
3.6
|
45.5
|
1.0
|
NH2
|
A:ARG296
|
3.8
|
74.7
|
1.0
|
CZ
|
A:TYR229
|
3.8
|
75.1
|
1.0
|
CA
|
A:GLY297
|
3.9
|
44.1
|
1.0
|
OG1
|
A:THR231
|
3.9
|
54.4
|
1.0
|
CB
|
A:ARG296
|
4.0
|
45.7
|
1.0
|
CZ
|
A:ARG296
|
4.0
|
97.2
|
1.0
|
C
|
A:ARG296
|
4.1
|
49.1
|
1.0
|
CG
|
A:ARG296
|
4.2
|
53.9
|
1.0
|
CD
|
A:ARG296
|
4.3
|
69.1
|
1.0
|
NE
|
A:ARG199
|
4.4
|
58.0
|
1.0
|
CD2
|
A:TYR229
|
4.7
|
64.5
|
1.0
|
CA
|
A:ARG296
|
4.7
|
45.3
|
1.0
|
CB
|
A:THR231
|
4.7
|
50.4
|
1.0
|
O
|
A:ARG296
|
4.7
|
48.7
|
1.0
|
O
|
A:HOH530
|
4.8
|
68.6
|
1.0
|
O
|
A:SER230
|
4.9
|
56.2
|
1.0
|
CD
|
A:ARG199
|
4.9
|
51.0
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4lb8
Go back to
Chlorine Binding Sites List in 4lb8
Chlorine binding site 2 out
of 5 in the Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:68.0
occ:1.00
|
N
|
A:ASN43
|
3.6
|
61.1
|
1.0
|
N
|
A:ASP44
|
3.9
|
68.9
|
1.0
|
CA
|
A:ASN43
|
4.2
|
62.5
|
1.0
|
C
|
A:ILE42
|
4.3
|
61.1
|
1.0
|
CA
|
A:ILE42
|
4.3
|
57.2
|
1.0
|
OD1
|
A:ASP44
|
4.4
|
97.6
|
1.0
|
C
|
A:ASN43
|
4.6
|
70.3
|
1.0
|
CB
|
A:ILE42
|
4.7
|
59.2
|
1.0
|
CA
|
A:ASP44
|
4.8
|
70.4
|
1.0
|
CG
|
A:ASP44
|
4.8
|
95.2
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4lb8
Go back to
Chlorine Binding Sites List in 4lb8
Chlorine binding site 3 out
of 5 in the Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:55.3
occ:1.00
|
N
|
A:LEU186
|
3.4
|
36.1
|
1.0
|
CB
|
A:ASP185
|
3.5
|
38.3
|
1.0
|
CA
|
A:ASP185
|
3.6
|
35.2
|
1.0
|
CG
|
A:LEU186
|
3.9
|
36.2
|
1.0
|
C
|
A:ASP185
|
4.0
|
39.2
|
1.0
|
CG
|
A:PHE305
|
4.0
|
35.9
|
1.0
|
CB
|
A:PHE305
|
4.1
|
35.2
|
1.0
|
CD2
|
A:PHE305
|
4.1
|
35.5
|
1.0
|
CB
|
A:LEU186
|
4.3
|
33.9
|
1.0
|
CA
|
A:LEU186
|
4.4
|
34.7
|
1.0
|
CD1
|
A:PHE305
|
4.4
|
37.6
|
1.0
|
CD1
|
A:LEU186
|
4.5
|
36.0
|
1.0
|
CE2
|
A:PHE305
|
4.7
|
38.5
|
1.0
|
CG
|
A:ASP185
|
4.8
|
53.0
|
1.0
|
N
|
A:ASP185
|
5.0
|
34.2
|
1.0
|
CD2
|
A:LEU186
|
5.0
|
37.3
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4lb8
Go back to
Chlorine Binding Sites List in 4lb8
Chlorine binding site 4 out
of 5 in the Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl403
b:65.2
occ:1.00
|
N
|
A:GLY210
|
3.2
|
38.8
|
1.0
|
N
|
A:SER209
|
3.8
|
42.1
|
1.0
|
O
|
A:HOH568
|
3.9
|
56.7
|
1.0
|
CA
|
A:SER209
|
3.9
|
42.2
|
1.0
|
C
|
A:SER209
|
3.9
|
44.0
|
1.0
|
CA
|
A:GLY210
|
4.0
|
37.1
|
1.0
|
CG2
|
A:VAL207
|
4.0
|
39.0
|
1.0
|
CG1
|
A:VAL207
|
4.2
|
39.0
|
1.0
|
NZ
|
A:LYS282
|
4.2
|
56.1
|
1.0
|
CD
|
A:LYS282
|
4.4
|
49.1
|
1.0
|
CB
|
A:VAL207
|
4.7
|
39.5
|
1.0
|
C
|
A:SER208
|
4.7
|
44.4
|
1.0
|
CE
|
A:LYS282
|
4.9
|
48.6
|
1.0
|
O
|
A:VAL207
|
4.9
|
43.0
|
1.0
|
C
|
A:VAL207
|
5.0
|
42.3
|
1.0
|
O
|
A:SER209
|
5.0
|
45.1
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4lb8
Go back to
Chlorine Binding Sites List in 4lb8
Chlorine binding site 5 out
of 5 in the Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A DUF4848 Family Protein (BT3222) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl404
b:87.7
occ:1.00
|
N
|
A:ASP267
|
3.2
|
44.4
|
1.0
|
CA
|
A:ILE266
|
3.6
|
35.8
|
1.0
|
O
|
A:ASP267
|
3.7
|
59.0
|
1.0
|
O
|
A:ALA265
|
3.9
|
42.0
|
1.0
|
C
|
A:ILE266
|
3.9
|
44.1
|
1.0
|
C
|
A:ASP267
|
4.1
|
55.1
|
1.0
|
CA
|
A:ASP267
|
4.2
|
45.2
|
1.0
|
CG2
|
A:ILE266
|
4.4
|
36.9
|
1.0
|
N
|
A:ILE266
|
4.5
|
37.1
|
1.0
|
CB
|
A:ILE266
|
4.5
|
36.9
|
1.0
|
O
|
A:HOH563
|
4.6
|
46.0
|
1.0
|
C
|
A:ALA265
|
4.6
|
40.7
|
1.0
|
CB
|
A:ASP267
|
4.6
|
46.6
|
1.0
|
CG1
|
A:ILE266
|
5.0
|
36.8
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 18:48:12 2024
|