Chlorine in PDB 4ldu: Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5

The structure of Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5, PDB code: 4ldu was solved by D.R.Boer, A.Freire-Rios, W.M.A.Van Den Berg, D.Weijers, M.Coll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.38 / 2.15
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.613, 91.502, 77.182, 90.00, 114.28, 90.00
R / Rfree (%)	19.5 / 25.2

The binding sites of Chlorine atom in the Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5 (pdb code 4ldu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5, PDB code: 4ldu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:84.0 occ:1.00 CG A:ARG315 3.8 37.3 1.0 CD1 A:LEU311 4.1 29.1 1.0 OH A:TYR74 4.2 24.1 1.0 CD A:ARG315 4.2 40.6 1.0 NE A:ARG315 4.3 41.2 1.0 CE1 A:TYR314 4.4 24.0 1.0 CD1 A:TYR314 4.5 23.4 1.0 CE2 A:TYR74 4.6 21.4 1.0 CG A:LEU311 4.7 28.0 1.0 CZ A:TYR74 4.8 21.8 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:68.7 occ:1.00 CZ2 A:TRP358 3.8 17.3 1.0 O A:PRO97 4.0 42.7 1.0 OD1 A:ASN98 4.0 61.5 1.0 O A:ARG357 4.0 21.6 1.0 CH2 A:TRP358 4.0 17.1 1.0 N A:TYR99 4.1 41.4 1.0 CE2 A:TRP358 4.1 17.6 1.0 CG A:ARG357 4.2 30.9 1.0 CA A:ASN98 4.2 49.4 1.0 CZ3 A:TRP358 4.5 16.8 1.0 CD2 A:TRP358 4.6 17.4 1.0 NE1 A:TRP358 4.7 16.9 1.0 C A:ASN98 4.7 46.6 1.0 CE3 A:TRP358 4.8 17.2 1.0 CB A:ARG357 4.8 26.8 1.0 C A:ARG357 4.8 22.7 1.0 O A:HOH625 4.9 48.2 1.0 C A:PRO97 4.9 47.2 1.0 O A:TYR99 4.9 31.7 1.0 CG A:ASN98 4.9 59.2 1.0 N A:ASN98 5.0 47.9 1.0

D.R.Boer, A.Freire-Rios, W.A.Van Den Berg, T.Saaki, I.W.Manfield, S.Kepinski, I.Lopez-Vidrieo, J.M.Franco-Zorrilla, S.C.De Vries, R.Solano, D.Weijers, M.Coll. Structural Basis For Dna Binding Specificity By the Auxin-Dependent Arf Transcription Factors. Cell(Cambridge,Mass.) V. 156 577 2014.
ISSN: ISSN 0092-8674
PubMed: 24485461
DOI: 10.1016/J.CELL.2013.12.027