Chlorine in PDB 4ldy: Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1

The structure of Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1, PDB code: 4ldy was solved by D.R.Boer, A.Freire-Rios, W.M.A.Van Den Berg, D.Weijers, M.Coll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.91 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.100, 84.240, 78.960, 90.00, 114.76, 90.00
R / Rfree (%)	21 / 25.9

The binding sites of Chlorine atom in the Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1 (pdb code 4ldy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1, PDB code: 4ldy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:54.1 occ:1.00 NH2 A:ARG177 3.6 73.1 1.0 CG A:PRO159 3.6 48.3 1.0 CG2 A:ILE179 3.8 56.8 1.0 NE A:ARG177 4.1 68.4 1.0 CD1 A:TRP161 4.1 53.0 1.0 CB A:ILE179 4.2 57.2 1.0 CZ A:ARG177 4.3 71.7 1.0 CB A:TRP161 4.5 47.2 1.0 CG A:TRP161 4.5 53.5 1.0 CB A:PRO159 4.5 47.2 1.0 CD A:PRO159 4.6 51.0 1.0 O A:HOH510 4.6 49.5 1.0 NE1 A:TRP161 4.9 56.7 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Dna Binding Domain of the G245A Mutant of Arabidopsis Thaliana Auxin Reponse Factor 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl401 b:49.1 occ:1.00 NH2 B:ARG181 3.1 28.1 1.0 NH1 B:ARG177 3.3 69.9 1.0 O B:HOH530 3.4 32.3 1.0 O B:HOH561 3.4 34.8 1.0 CG2 B:ILE179 3.9 31.3 1.0 CZ B:ARG181 4.0 31.7 1.0 NE B:ARG181 4.1 33.4 1.0 CD B:ARG177 4.3 53.1 1.0 CZ B:ARG177 4.4 69.5 1.0 CD1 B:ILE179 4.7 33.1 1.0 NE B:ARG177 4.8 63.4 1.0 CD1 B:TRP161 4.8 41.3 1.0 CG B:TRP161 4.9 41.4 1.0 CB B:ILE179 5.0 31.4 1.0 CB B:TRP161 5.0 38.9 1.0

D.R.Boer, A.Freire-Rios, W.A.Van Den Berg, T.Saaki, I.W.Manfield, S.Kepinski, I.Lopez-Vidrieo, J.M.Franco-Zorrilla, S.C.De Vries, R.Solano, D.Weijers, M.Coll. Structural Basis For Dna Binding Specificity By the Auxin-Dependent Arf Transcription Factors. Cell(Cambridge,Mass.) V. 156 577 2014.
ISSN: ISSN 0092-8674
PubMed: 24485461
DOI: 10.1016/J.CELL.2013.12.027