Atomistry » Chlorine » PDB 4lb8-4lht » 4lgv
Atomistry »
  Chlorine »
    PDB 4lb8-4lht »
      4lgv »

Chlorine in PDB 4lgv: X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium

Enzymatic activity of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium

All present enzymatic activity of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium:
1.1.1.49;

Protein crystallography data

The structure of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium, PDB code: 4lgv was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.220, 170.210, 225.030, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium (pdb code 4lgv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium, PDB code: 4lgv:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4lgv

Go back to Chlorine Binding Sites List in 4lgv
Chlorine binding site 1 out of 5 in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:53.8
occ:1.00
 N A:ASP20 3.3 34.6 1.0
CA A:GLY19 3.7 29.5 1.0
OD2 A:ASP20 3.9 59.3 1.0
CG A:ASP20 3.9 49.5 1.0
C A:GLY19 4.0 30.4 1.0
CB A:ASP20 4.2 41.2 1.0
CA A:ASP20 4.3 36.6 1.0
OD1 A:ASP20 4.4 55.6 1.0

Chlorine binding site 2 out of 5 in 4lgv

Go back to Chlorine Binding Sites List in 4lgv
Chlorine binding site 2 out of 5 in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:52.7
occ:1.00
 O B:HOH635 3.4 26.2 1.0
N B:HIS335 3.7 21.6 1.0
CA B:HIS334 4.0 21.0 1.0
ND1 B:HIS334 4.0 22.3 1.0
O B:HOH709 4.2 35.6 1.0
CB B:HIS334 4.2 21.2 1.0
C B:HIS334 4.4 21.6 1.0
CD2 B:HIS335 4.5 25.3 1.0
CB B:HIS335 4.5 22.5 1.0
CG B:HIS334 4.6 21.8 1.0
CA B:HIS335 4.7 22.0 1.0
CG B:HIS335 4.8 24.1 1.0

Chlorine binding site 3 out of 5 in 4lgv

Go back to Chlorine Binding Sites List in 4lgv
Chlorine binding site 3 out of 5 in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:52.2
occ:1.00
 N C:HIS335 3.4 20.9 1.0
O C:HOH614 3.7 22.9 1.0
CA C:HIS334 3.7 20.2 1.0
O C:HOH756 3.9 32.0 1.0
CB C:HIS334 3.9 20.8 1.0
ND1 C:HIS334 3.9 23.1 1.0
C C:HIS334 4.1 20.2 1.0
CB C:HIS335 4.2 23.4 1.0
CD2 C:HIS335 4.2 26.7 1.0
CA C:HIS335 4.3 22.1 1.0
CG C:HIS334 4.4 21.5 1.0
CG C:HIS335 4.5 26.1 1.0
O C:HIS335 4.9 21.7 1.0
N C:HIS334 5.0 19.4 1.0

Chlorine binding site 4 out of 5 in 4lgv

Go back to Chlorine Binding Sites List in 4lgv
Chlorine binding site 4 out of 5 in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl503

b:62.5
occ:1.00
 NH1 C:ARG317 3.2 29.6 1.0
NH2 C:ARG317 3.5 28.2 1.0
O C:GLN457 3.7 27.6 1.0
CZ C:ARG317 3.8 28.5 1.0
CG C:TRP441 3.8 30.1 1.0
CD1 C:TRP441 3.9 31.3 1.0
CD2 C:TRP441 3.9 28.8 1.0
NE1 C:TRP441 4.0 30.2 1.0
CE2 C:TRP441 4.0 29.6 1.0
CB C:TRP456 4.1 27.4 1.0
O C:TRP456 4.1 29.4 1.0
C C:GLN457 4.2 31.7 1.0
C C:TRP456 4.4 29.5 1.0
CB C:TRP441 4.5 31.7 1.0
CE3 C:TRP441 4.5 28.0 1.0
N C:GLN458 4.6 34.4 1.0
CZ2 C:TRP441 4.7 29.6 1.0
N C:GLN457 4.8 31.0 1.0
CA C:GLN458 4.8 35.8 0.5
CA C:GLN458 4.8 35.7 0.5
OE1 C:GLN458 4.9 44.1 0.5
CA C:TRP456 4.9 27.8 1.0

Chlorine binding site 5 out of 5 in 4lgv

Go back to Chlorine Binding Sites List in 4lgv
Chlorine binding site 5 out of 5 in the X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Crystal Structure of Glucose-6-Phosphate 1-Dehydrogenase From Mycobacterium Avium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl501

b:56.0
occ:1.00
 N D:HIS335 3.4 24.8 1.0
O D:HOH670 3.6 35.9 1.0
CA D:HIS334 3.9 26.4 1.0
O D:HOH671 3.9 33.4 1.0
CB D:HIS334 4.1 26.9 1.0
CD2 D:HIS335 4.1 27.5 1.0
CB D:HIS335 4.1 25.2 1.0
ND1 D:HIS334 4.1 32.0 1.0
C D:HIS334 4.2 25.4 1.0
CA D:HIS335 4.3 25.0 1.0
CG D:HIS335 4.4 27.7 1.0
CG D:HIS334 4.6 29.6 1.0
O D:HIS335 4.9 22.3 1.0

Reference:

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003
Page generated: Sun Jul 21 18:56:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy