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Chlorine in PDB 4li7: Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide

Enzymatic activity of Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide

All present enzymatic activity of Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide:
2.4.2.30;

Protein crystallography data

The structure of Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide, PDB code: 4li7 was solved by C.A.Kirby, T.Stams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.70 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.400, 44.000, 87.400, 90.00, 90.40, 90.00
R / Rfree (%) n/a / n/a

Other elements in 4li7:

The structure of Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide (pdb code 4li7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide, PDB code: 4li7:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4li7

Go back to Chlorine Binding Sites List in 4li7
Chlorine binding site 1 out of 2 in the Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1405

b:13.2
occ:1.00
CL1 A:1XP1405 0.0 13.2 1.0
C7 A:1XP1405 1.7 17.4 1.0
C5 A:1XP1405 2.7 19.2 1.0
C6 A:1XP1405 2.8 17.6 1.0
C9 A:1XP1405 3.1 17.7 1.0
OE2 A:GLU1291 3.6 44.0 1.0
N2 A:1XP1405 3.7 19.3 1.0
CE2 A:TYR1224 3.8 17.5 1.0
CB A:TYR1213 3.9 16.5 1.0
CG A:LYS1220 4.0 22.2 1.0
CD2 A:TYR1224 4.0 17.8 1.0
C3 A:1XP1405 4.1 18.6 1.0
C2 A:1XP1405 4.1 19.6 1.0
CE A:LYS1220 4.3 29.6 1.0
CB A:ALA1215 4.5 16.6 1.0
CD A:GLU1291 4.5 43.6 1.0
CZ A:TYR1224 4.5 20.0 1.0
C A:PHE1214 4.6 18.6 1.0
O A:PHE1214 4.6 20.0 1.0
N A:PHE1214 4.6 16.9 1.0
C1 A:1XP1405 4.7 20.4 1.0
C A:TYR1213 4.7 16.4 1.0
CD2 A:TYR1213 4.7 17.8 1.0
CD A:LYS1220 4.7 24.8 1.0
CG A:TYR1213 4.7 16.9 1.0
N A:ALA1215 4.8 19.6 1.0
CG A:TYR1224 4.9 17.1 1.0
OH A:TYR1224 4.9 21.4 1.0
O A:TYR1213 5.0 16.6 1.0
CA A:TYR1213 5.0 15.8 1.0
O A:LYS1220 5.0 14.9 1.0
CA A:PHE1214 5.0 17.8 1.0

Chlorine binding site 2 out of 2 in 4li7

Go back to Chlorine Binding Sites List in 4li7
Chlorine binding site 2 out of 2 in the Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1404

b:3.3
occ:1.00
CL1 B:1XP1404 0.0 3.3 1.0
C7 B:1XP1404 1.7 11.5 1.0
C5 B:1XP1404 2.7 14.7 1.0
C6 B:1XP1404 2.8 13.6 1.0
C9 B:1XP1404 3.2 15.8 1.0
OE1 B:GLU1291 3.2 33.8 1.0
CE1 B:TYR1224 3.7 18.0 1.0
N2 B:1XP1404 3.8 16.4 1.0
CB B:TYR1213 3.9 14.2 1.0
CD1 B:TYR1224 4.0 15.6 1.0
CG B:LYS1220 4.0 15.4 1.0
C2 B:1XP1404 4.1 15.6 1.0
C3 B:1XP1404 4.1 14.2 1.0
CZ B:TYR1224 4.3 19.2 1.0
CE B:LYS1220 4.3 23.5 1.0
CD B:GLU1291 4.3 31.3 1.0
O B:PHE1214 4.5 13.0 1.0
CD2 B:TYR1213 4.6 14.8 1.0
CG B:TYR1213 4.6 14.5 1.0
C1 B:1XP1404 4.6 17.2 1.0
CB B:ALA1215 4.7 16.2 1.0
C B:TYR1213 4.7 15.0 1.0
C B:PHE1214 4.7 15.5 1.0
OH B:TYR1224 4.7 19.5 1.0
CG B:TYR1224 4.7 15.5 1.0
N B:PHE1214 4.7 14.4 1.0
CD B:LYS1220 4.8 20.1 1.0
CG B:GLU1291 4.9 27.4 1.0
O B:LYS1220 4.9 12.7 1.0
O B:TYR1213 4.9 15.0 1.0
CA B:TYR1213 5.0 15.5 1.0

Reference:

M.D.Shultz, A.K.Cheung, C.A.Kirby, B.Firestone, J.Fan, C.H.Chen, Z.Chen, D.N.Chin, L.Dipietro, A.Fazal, Y.Feng, P.D.Fortin, T.Gould, B.Lagu, H.Lei, F.Lenoir, D.Majumdar, E.Ochala, M.G.Palermo, L.Pham, M.Pu, T.Smith, T.Stams, R.C.Tomlinson, B.B.Toure, M.Visser, R.M.Wang, N.J.Waters, W.Shao. Identification of Nvp-TNKS656: the Use of Structure-Efficiency Relationships to Generate A Highly Potent, Selective, and Orally Active Tankyrase Inhibitor. J.Med.Chem. V. 56 6495 2013.
ISSN: ISSN 0022-2623
PubMed: 23844574
DOI: 10.1021/JM400807N
Page generated: Sun Jul 21 18:58:35 2024

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